Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11090 430 / 3e-152 alpha/beta-Hydrolases superfamily protein (.1) AT2G39420 270 / 1e-89 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 266 / 6e-88 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G16120 258 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G14980 256 / 8e-84 alpha/beta-Hydrolases superfamily protein (.1) AT2G39400 252 / 1e-82 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 253 / 3e-82 alpha/beta-Hydrolases superfamily protein (.1) AT3G62860 251 / 7e-82 alpha/beta-Hydrolases superfamily protein (.1) AT3G55180 250 / 9e-82 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 246 / 3e-80 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018466 [exp] 513 / 0 AT1G11090 382 / 1e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10040328 [exp] 279 / 4e-93 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10023448 [exp] 277 / 2e-88 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10017600 [exp] 254 / 2e-83 AT5G16120 409 / 5e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017601 [exp] 254 / 5e-83 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033561 [exp] 254 / 4e-82 AT5G16120 441 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10007877 [exp] 252 / 7e-82 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10009169 [exp] 246 / 6e-80 AT5G16120 490 / 2e-175 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10025754 [exp] 244 / 5e-79 AT1G52760 564 / 0.0 lysophospholipase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G046500 [exp] 476 / 1e-170 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G212200 [exp] 266 / 7e-88 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 263 / 1e-86 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 262 / 5e-86 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G114800 [exp] 261 / 3e-85 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.014G129000 [exp] 253 / 2e-82 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G059200 [exp] 241 / 4e-78 AT1G52760 560 / 0.0 lysophospholipase 2 (.1) Potri.001G175000 [exp] 237 / 2e-76 AT1G52760 554 / 0.0 lysophospholipase 2 (.1) Potri.010G222300 [exp] 225 / 8e-72 AT5G19290 472 / 8e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466700 [exp] 225 / 9e-72 AT5G14980 346 / 6e-119 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF12146 [flax] [poplar] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Lus10011212 pacid=23147106 polypeptide=Lus10011212 locus=Lus10011212.g ID=Lus10011212.BGIv1.0 annot-version=v1.0 ATGCAGGAGCCACAGGATGAAGGAGAAGAACAAGAGCTCCATTACTGGGGGGATCTACCAGAGGCAGAGTACTACAAGCAGCAGAAGATCAGAGCTGGAC ATTCTTACTACACATCGCCCAGAGGGTTGAAGCTTTTCACCAGAACATGGCTGCCCAACTCGTCGAAGCCGCCACGAGCCTTGATCTGTATGGTCCATGG ATATGGCAACGACTGCAGCTGGACATTCCAATCCACTGCCATCTACCTAGCGAAGAATGGGTTCGCCTGCTTCAGCCTTGACATCGAAGGCCACGGAAGA TCGCAAGGTTTGAAGGCTTACGTTTCTAACATTGACCTCGTCGTTGATGACTGCTCGTCGTATTTCGGTGCCGTGAAACGAGATCCTTTGTTCGCCGGCG TAAGGTCATTCCTTTATGGAGAATCGATGGGCGGCGCTATGTGCCTCCTCATCCACTTTGCTAACCCTAGCTCGTTTGACGGCGCCGTATTGGTGTCTCC GATGTGCAGGATCGCGGACGAGATAAAGCCGAAGTGGCCTATCCCGGAGATATTGACGTTCGTGGCGAGATTCCTGCCGACACTGGCGATTGTGCCGTCG GGAGACGTGCTGAGGAGCTCGGTGAAGGTGAAGGACAAGCTGGAAGTGGCGGAGATGAATCCGACGAGGTACAGAGGGAAGCCGAGGCTGGGGACTGTCC TGGAGCTGATTCGAGTGACGGATTGTCTAGCGAAGAGGCTAACCGATGTGAGCTTGCCGTTCATGGTCTGCCACGGGAGCGCGGACGTGGTGACGGATCC GAACGTGAGCAGATCGCTGTACGAAGAAGCCAAGAGCGAGGACAAGACGGTGAAGATCTACGATGGGATGATGCATTCGTTGCTGTTCGGGGAGACGGAC GAGAACATCGAACTTGTTCGTCGGGATATTCTGGATTGGATCAGTGATAGATGCTGA
AA sequence Show only first row Show all	>Lus10011212 pacid=23147106 polypeptide=Lus10011212 locus=Lus10011212.g ID=Lus10011212.BGIv1.0 annot-version=v1.0 MQEPQDEGEEQELHYWGDLPEAEYYKQQKIRAGHSYYTSPRGLKLFTRTWLPNSSKPPRALICMVHGYGNDCSWTFQSTAIYLAKNGFACFSLDIEGHGR SQGLKAYVSNIDLVVDDCSSYFGAVKRDPLFAGVRSFLYGESMGGAMCLLIHFANPSSFDGAVLVSPMCRIADEIKPKWPIPEILTFVARFLPTLAIVPS GDVLRSSVKVKDKLEVAEMNPTRYRGKPRLGTVLELIRVTDCLAKRLTDVSLPFMVCHGSADVVTDPNVSRSLYEEAKSEDKTVKIYDGMMHSLLFGETD ENIELVRRDILDWISDRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11090			alpha/beta-Hydrolases superfam...		Lus10011212 [exp]	0	1
AT1G11090			alpha/beta-Hydrolases superfam...		Lus10018466 [exp]	1.0	0.9107
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10002148 [exp]	1.4	0.9099
AT3G09650		CRM3, HCF152	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10015059 [exp]	4.2	0.8793
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10002563 [exp]	9.6	0.8977
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10027363 [exp]	10.9	0.8812
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Lus10031284 [exp]	15.7	0.8957
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10042771 [exp]	16.9	0.8836
AT3G13620			Amino acid permease family pro...		Lus10034046 [exp]	18.0	0.8553
AT3G18280			Bifunctional inhibitor/lipid-t...		Lus10033574 [exp]	18.8	0.8478
AT5G01550		LECRKA4.2	lectin receptor kinase a4.1 (....		Lus10022662 [exp]	19.0	0.8677

Compare expression of checked genes

Lus10011212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.