Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11080 669 / 0 SCPL31 serine carboxypeptidase-like 31 (.1.2) AT4G15100 625 / 0 SCPL30 serine carboxypeptidase-like 30 (.1) AT1G61130 617 / 0 SCPL32 serine carboxypeptidase-like 32 (.1) AT5G08260 472 / 3e-164 SCPL35 serine carboxypeptidase-like 35 (.1) AT5G23210 439 / 5e-151 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT3G17180 436 / 8e-150 SCPL33 serine carboxypeptidase-like 33 (.1) AT4G30610 434 / 1e-149 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 422 / 6e-145 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT2G24010 416 / 1e-142 SCPL23 serine carboxypeptidase-like 23 (.1) AT3G02110 413 / 4e-141 SCPL25 serine carboxypeptidase-like 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018467 [exp] 957 / 0 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10010190 [exp] 449 / 5e-155 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017391 [exp] 449 / 8e-155 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10037810 [exp] 439 / 6e-151 AT3G17180 565 / 0.0 serine carboxypeptidase-like 33 (.1) Lus10015489 [exp] 437 / 3e-150 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10019954 [exp] 434 / 4e-149 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10010191 [exp] 418 / 8e-143 AT5G23210 476 / 2e-165 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017392 [exp] 414 / 3e-141 AT5G23210 475 / 8e-165 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10015382 [exp] 413 / 2e-140 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G046600 [exp] 787 / 0 AT1G11080 674 / 0.0 serine carboxypeptidase-like 31 (.1.2) Potri.004G037800 [exp] 762 / 0 AT1G11080 653 / 0.0 serine carboxypeptidase-like 31 (.1.2) Potri.007G072300 [exp] 463 / 1e-160 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.005G091700 [exp] 461 / 7e-160 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.006G183200 [exp] 441 / 4e-152 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G091800 [exp] 438 / 9e-151 AT5G23210 585 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.018G105700 [exp] 429 / 2e-147 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.010G149400 [exp] 423 / 6e-145 AT3G17180 564 / 0.0 serine carboxypeptidase-like 33 (.1) Potri.004G120100 [exp] 418 / 5e-143 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.017G094100 [exp] 410 / 6e-140 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10011213 pacid=23147119 polypeptide=Lus10011213 locus=Lus10011213.g ID=Lus10011213.BGIv1.0 annot-version=v1.0 ATGACAGCTTTACTGCCTTCCATCATTGTTGCTCTAGTATATCTGATACCTGTTTCCATTGCCAGACAAGGGGAATGGAGTGTTCAGAAGAAATTGAACA CATTGGTCAATGATCACCTTGTAACTAGTTTGCCTGGACAGCCTGATGTTAACTTCAAGCACTATGCTGGCTTTCTTCCTGTCAATGAAACAAGTGGCAG GGCACTGTTTTACTGGTTCTATGAAGCCACCAATCAATCAGATGAAAAACCTCTAGTCCTTTGGCTTAATGGAGGTCCAGGATGCTCTTCTGTGGGTTAT GGAGCAACTCAAGAGATTGGCCCTTTCATAGTGGATGCTAATGGACATGGGATTAAATATAATCCTTTCTCTTGGAACACAGAGGCCAACATGCTGTTCC TGGAATCTCCTGTTGGAGTTGGATTTTCTTACACGAACACCAGTACGGATTATAATGATCTCGGAGATGAGCTTACTGCTAATGATGCTTATGCTTTCCT GCACAAATGGTTTGTCAAGTTCCCGTCTTACCGAACTCGGACGTTCTACATAGCAGGAGAAAGTTATGCAGGAAAGTACATCCCGGAGCTCGCTGAGTTC ATACTCGAAAGGAACAACGACCCTTCTCTTCATATTGACCTCAAGGGAATTCTGATGGGTAATCCTGAAACGAACGACGCTGAGGACTGGAGAGGAATGG TGGACTATGCATGGAGCCATGCAGTGATATCAGACGAGACCCACAGGGCCATAATGCAGAGCTGCAACTTCAGCAGCGACGACACCTGGAGCAACAACGA TTGCAGCGACTCGGTAGATGAATTGCTCAGGCAGTACAAGGAGATCGACATCTACAGCTTGTACACATCGGTCTGCGTTGGTGACTCGGCCAGTTCGGAG CAGAAGTCCACGGAGGTTATGTTCAATCGCGGTTCGAAAATGCTGCCGAGAATAATGGGAGGGTATGATCCATGTCTGGATGACTACGCAAAGGCTTTTT ACAACAGGGCAGATGTTCAGAAGGCCCTCCATGTGAGCGATGGTCACCGTCTCAGGAACTGGAGCATATGCAATGAAAAGATATTCAATGAGTGGAAGTA CTTAAAGCCATCAGTCCTTCCTATCTACACAAAGCTCATTGCAGCTGGAATCAGGATCTGGGTCTACAGTGGGGACACCGACGGTAGGGTGCCGGTGCTA TCGACTAGATACAGCATAAGTGCATTGGGGCTGAAGATAACAAAGTCATGGAGGCCATGGTACCACCAAAGGCAAGTCAGTGGGTGGTTTCAGGAATACC AAGGCCTCACTTTCGCCACTTTTCGTGGCGCTGGCCATGCCGTCCCTGTCTTCAAACCCAGCGAAACCCTTTCCTTTTTCTCTGCCTTTCTCCTCGGCCA GGCTCTGCCTTCCGCCCGATAA
AA sequence Show only first row Show all	>Lus10011213 pacid=23147119 polypeptide=Lus10011213 locus=Lus10011213.g ID=Lus10011213.BGIv1.0 annot-version=v1.0 MTALLPSIIVALVYLIPVSIARQGEWSVQKKLNTLVNDHLVTSLPGQPDVNFKHYAGFLPVNETSGRALFYWFYEATNQSDEKPLVLWLNGGPGCSSVGY GATQEIGPFIVDANGHGIKYNPFSWNTEANMLFLESPVGVGFSYTNTSTDYNDLGDELTANDAYAFLHKWFVKFPSYRTRTFYIAGESYAGKYIPELAEF ILERNNDPSLHIDLKGILMGNPETNDAEDWRGMVDYAWSHAVISDETHRAIMQSCNFSSDDTWSNNDCSDSVDELLRQYKEIDIYSLYTSVCVGDSASSE QKSTEVMFNRGSKMLPRIMGGYDPCLDDYAKAFYNRADVQKALHVSDGHRLRNWSICNEKIFNEWKYLKPSVLPIYTKLIAAGIRIWVYSGDTDGRVPVL STRYSISALGLKITKSWRPWYHQRQVSGWFQEYQGLTFATFRGAGHAVPVFKPSETLSFFSAFLLGQALPSAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Lus10011213 [exp]	0	1
AT2G38600			HAD superfamily, subfamily III...		Lus10021380 [exp]	1.4	0.9608
AT2G38600			HAD superfamily, subfamily III...		Lus10017060 [exp]	3.7	0.9395
AT5G52180			unknown protein		Lus10015101 [exp]	7.5	0.8730
AT2G28790			Pathogenesis-related thaumatin...		Lus10040843 [exp]	8.5	0.9032
AT2G34930			disease resistance family prot...		Lus10016325 [exp]	10.7	0.8410
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Lus10025116 [exp]	11.0	0.8901
AT1G49000			unknown protein		Lus10032453 [exp]	11.2	0.8820
AT1G31490			HXXXD-type acyl-transferase fa...		Lus10023806 [exp]	14.8	0.9005
AT3G14240			Subtilase family protein (.1)		Lus10017301 [exp]	15.4	0.8522
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10035656 [exp]	16.0	0.8046

Compare expression of checked genes

Lus10011213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.