Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60620 481 / 3e-170 ATRPAC43 RNA polymerase I subunit 43 (.1) AT1G60850 426 / 8e-149 AAC42, ATRPAC42 DNA-directed RNA polymerase family protein (.1.2.3) AT2G15430 103 / 9e-25 NRPE3A, NRPD3, NRPB3, RPB35.5A, RBP36A DNA-directed RNA polymerase family protein (.1) AT2G15400 96 / 6e-22 NRPE3B, RBP36B DNA-directed RNA polymerase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018468 [exp] 726 / 0 AT1G60620 513 / 0.0 RNA polymerase I subunit 43 (.1) Lus10002823 [exp] 104 / 4e-25 AT2G15430 541 / 0.0 DNA-directed RNA polymerase family protein (.1) Lus10027873 [exp] 102 / 2e-24 AT2G15430 539 / 0.0 DNA-directed RNA polymerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369500 [exp] 486 / 4e-172 AT1G60620 508 / 0.0 RNA polymerase I subunit 43 (.1) Potri.009G097600 [exp] 113 / 3e-28 AT2G15430 547 / 0.0 DNA-directed RNA polymerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0509 [flax] [poplar] RBP11-like PF01193 [flax] [poplar] RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain CL0509 [flax] [poplar] PF01000 [flax] [poplar] RNA_pol_A_bac RNA polymerase Rpb3/RpoA insert domain
Representative CDS sequence Show only first row Show all	>Lus10011214 pacid=23147149 polypeptide=Lus10011214 locus=Lus10011214.g ID=Lus10011214.BGIv1.0 annot-version=v1.0 ATGGGTCAATCGGAGAAGAAAGAAGCGGAAAGCAACGTCGGCGAGCAGAGTAATAATAAAGATAAGAAGTTCAACATAATGGATTTGCCCGACCTTCCTA TGGGCATTCTCCCGCCGCACCTCCATCAACAGAAGACTCGCGTCGCTTGCAAACCCGACGCTCCTATCCATACTGATAATATCACGTACAGTGGTGCATA CCAATCCCTTGGCGTCGATAACAGTGTTCACTTGGACTCCTTCCGCAATGATTTCAAAGTCGAAATCATCCGGCTCAACAAGGACGATATGGAGTTCGAT ATGATCGGTATTGATCCAGCTCTTGCAAATGCCTTCCGGAGAATCCTAATTGCTGAGGTACCTTCAATGGCTATCGAAAAAGTTCTCGTGGCATACAACA CATCACTGGTGCAAGACGAAGTGCTTGCTCATCGACTAGGTCTCATTCCGATCAAGGCAGATCCTAGACTGTTTGAATATCTTTCAGCAAGCGATACACC TAACGAGAAGAACACTATAGTTTTCAAGCTTCATGCTCGTTGTGGACCTAGTGAACGTCGAACAGTGTATTCGGAGGAATTGAAGTGGCTTCCCAACGGG AGCGAGTTGGAAAGGGAAACAGACAGCGCAGATTCCAAACCGAGTACATATACTTCGTATACTTGTAGCCAGAGCACCTTACCGGAATTCTCGACTAATC CAATCGGCCCTTCCGAGGATAAGATCATACTCGCTAAACTTGGCGGCAACCAGGCAAGAATTTCTCCTACCATTTTTTACTCTGTTCAGGAAATCGAGCT AGAAGCACACGCCGTTAAAGGCGTGGGCAAAACGCACGCGAAATGGTCTCCGGTAGCCACTGCTTGGTACCGTATGCTTCCCGAGGTAGTATTACTCGAA GATGTAGAAGACGAAGATGCCGAAGAACTCGTGAAGAAATGTCCCGTTAATGTATTCGACATCGAAGACCTTGGTCACGGTACAAAAAGGGCAACGGTGG CTAGACCGAGGGATTGCACGTTGTGCCGGGAATGCATCAGAGGCGAACAATGGGAGGATCGTGTGGCGTTGCGCCGAGTCAAAGATCATTTCATCTTTAC TGTTGAATCAAGCGGAGTGTTACCGCCAGAGATTATATTTTCAGAAGCAGTGAAGATCTTGGAAGAGAAATGCAGCAGAGTAATCAGCGAGCTCTCTTGA
AA sequence Show only first row Show all	>Lus10011214 pacid=23147149 polypeptide=Lus10011214 locus=Lus10011214.g ID=Lus10011214.BGIv1.0 annot-version=v1.0 MGQSEKKEAESNVGEQSNNKDKKFNIMDLPDLPMGILPPHLHQQKTRVACKPDAPIHTDNITYSGAYQSLGVDNSVHLDSFRNDFKVEIIRLNKDDMEFD MIGIDPALANAFRRILIAEVPSMAIEKVLVAYNTSLVQDEVLAHRLGLIPIKADPRLFEYLSASDTPNEKNTIVFKLHARCGPSERRTVYSEELKWLPNG SELERETDSADSKPSTYTSYTCSQSTLPEFSTNPIGPSEDKIILAKLGGNQARISPTIFYSVQEIELEAHAVKGVGKTHAKWSPVATAWYRMLPEVVLLE DVEDEDAEELVKKCPVNVFDIEDLGHGTKRATVARPRDCTLCRECIRGEQWEDRVALRRVKDHFIFTVESSGVLPPEIIFSEAVKILEEKCSRVISELS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60620		ATRPAC43	RNA polymerase I subunit 43 (....		Lus10011214 [exp]	0	1
AT2G25970			KH domain-containing protein (...		Lus10023854 [exp]	2.6	0.9163
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	9.6	0.9143
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10030325 [exp]	11.6	0.9051
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10012706 [exp]	15.6	0.9098
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10010641 [exp]	18.2	0.9112
AT3G61700			Plant protein 1589 of unknown ...		Lus10019011 [exp]	19.0	0.8960
AT4G39200			Ribosomal protein S25 family p...		Lus10021706 [exp]	23.0	0.9040
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031277 [exp]	27.2	0.8957
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10002823 [exp]	29.3	0.8917
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Lus10010990 [exp]	29.4	0.8974

Compare expression of checked genes

Lus10011214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.