Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61110 290 / 8e-97 NAC ANAC025 NAC domain containing protein 25 (.1) AT3G15510 289 / 1e-95 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT1G52880 262 / 7e-86 NAC ATNAM, NAM, ANAC018, NARS2 NAC-REGULATED SEED MORPHOLOGY 2, Arabidopsis NAC domain containing protein 18, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G04070 257 / 3e-83 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT1G69490 241 / 4e-78 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT1G01720 234 / 2e-75 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G77450 233 / 2e-75 NAC ANAC032 NAC domain containing protein 32 (.1) AT1G52890 231 / 6e-74 NAC ANAC019 NAC domain containing protein 19 (.1) AT4G27410 230 / 1e-73 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT3G15500 230 / 2e-73 NAC ATNAC3, ANAC055 NAC domain containing protein 55, NAC domain containing protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018469 [exp] 596 / 0 AT1G61110 301 / 5e-101 NAC domain containing protein 25 (.1) Lus10043095 [exp] 311 / 6e-104 AT3G15510 351 / 1e-119 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10032657 [exp] 308 / 6e-103 AT3G15510 353 / 1e-120 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10006547 [exp] 266 / 1e-86 AT3G04070 337 / 4e-114 NAC domain containing protein 47 (.1.2) Lus10003269 [exp] 266 / 1e-86 AT3G04070 324 / 3e-109 NAC domain containing protein 47 (.1.2) Lus10042531 [exp] 256 / 1e-82 AT3G04070 303 / 4e-101 NAC domain containing protein 47 (.1.2) Lus10023179 [exp] 251 / 4e-81 AT1G61110 248 / 2e-80 NAC domain containing protein 25 (.1) Lus10015076 [exp] 251 / 6e-81 AT1G61110 247 / 5e-80 NAC domain containing protein 25 (.1) Lus10036117 [exp] 249 / 2e-80 AT3G15510 241 / 2e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G046700 [exp] 354 / 2e-121 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.004G038000 [exp] 348 / 3e-119 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.001G404400 [exp] 314 / 2e-105 AT3G15510 345 / 1e-117 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.011G123500 [exp] 308 / 2e-103 AT3G15510 323 / 4e-109 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.013G054000 [exp] 270 / 3e-88 AT3G04070 338 / 9e-115 NAC domain containing protein 47 (.1.2) Potri.019G031400 [exp] 262 / 4e-85 AT3G04070 332 / 1e-112 NAC domain containing protein 47 (.1.2) Potri.006G129400 [exp] 249 / 2e-80 AT1G61110 247 / 3e-80 NAC domain containing protein 25 (.1) Potri.011G058600 [exp] 248 / 5e-80 AT3G15510 227 / 6e-72 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.004G049500 [exp] 247 / 1e-79 AT1G61110 232 / 4e-74 NAC domain containing protein 25 (.1) Potri.008G089000 [exp] 239 / 2e-77 AT1G69490 331 / 6e-115 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10011215 pacid=23147102 polypeptide=Lus10011215 locus=Lus10011215.g ID=Lus10011215.BGIv1.0 annot-version=v1.0 ATGGAGAGCACCGATTCATCGTCGGCGACTCACCACCACCACCACCACCCGAACCTCCCACCGGGGTTCCGATTCCATCCGACCGATGAGGAGCTCGTCG TTCACTACCTCAAGAAGAAAGCCGCCTCCCTCCCTCTTCCAGTCACCATCATCGCCGACGTCGATCTCTACAAATTCGACCCATGGGAGCTCCCCGGTAA GGCGACGTTTGGAGAGCAAGAGTGGTACTTTTTCAGTCCGAGGGATCGAAAGTACCCGAACGGAGCGCGACCCAATCGGGCCGCAACGTCTGGATACTGG AAGGCGACTGGGACGGATAAACCGATATTGAGCTCAACCGGAGCGGGTAAGGTCGGGGTGAAGAAGGCCTTGGTTTTCTACGGCGGGAAGCCACCTAAAG GGGTTAAGACTAATTGGATTATGCATGAATATCGTTTGGTAAATAATAATTACGGCGGTAATTCTTCTACGCTACTTAAGCCGCCGGTTTCCAATTCCGG CTCGAAGAAGTCGTCACTACGGTTGGACGATTGGGTGTTGTGCCGGATTTACAAGAAGAACACAAATTCGCAGAATCGGCCTGTTGATCAAAGAGATTAC GAGCATATAAATCATCATCATCAGGATTCTAATTCAATCGAAGCGATGCTGGCTTCTACGACGGCGACGGTGAAGCCAGCTGGAAGCTACGCTTCTCTGC TGGAAGGCGAGGAGAATTTCTTCGACGGAATGCTGACAGCCGCCAACGCTGCCTCCGGCGGCGGAGCCGACGGGAGTTTCAGGATGAATAGCTGCTCGAA GCGCGGGATTGTGATCAACGACTATTGGAACAGCATCAACGGCGAAACAATGTCGTCGCCCGGTGGGAATAAGCGGTTTCACGGTGATCTGAACACCGGT GGCGGTGGAGGAGGCGGCGGAGGGATGGAGTATAACGGTGGCGCGACGAATTCGTTTGTTTCGCTGATGAATCAGAGTAATACGGCGGCGTTTCAGGGAG GCGGGATTATTGGGGATTTGGGTGATGAAGACGGCGTCGTTTTGAGGCAGCAATTTCAGTTTGGTTCATGA
AA sequence Show only first row Show all	>Lus10011215 pacid=23147102 polypeptide=Lus10011215 locus=Lus10011215.g ID=Lus10011215.BGIv1.0 annot-version=v1.0 MESTDSSSATHHHHHHPNLPPGFRFHPTDEELVVHYLKKKAASLPLPVTIIADVDLYKFDPWELPGKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYW KATGTDKPILSSTGAGKVGVKKALVFYGGKPPKGVKTNWIMHEYRLVNNNYGGNSSTLLKPPVSNSGSKKSSLRLDDWVLCRIYKKNTNSQNRPVDQRDY EHINHHHQDSNSIEAMLASTTATVKPAGSYASLLEGEENFFDGMLTAANAASGGGADGSFRMNSCSKRGIVINDYWNSINGETMSSPGGNKRFHGDLNTG GGGGGGGGMEYNGGATNSFVSLMNQSNTAAFQGGGIIGDLGDEDGVVLRQQFQFGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10011215 [exp]	0	1
AT1G75800			Pathogenesis-related thaumatin...		Lus10033136 [exp]	1.0	0.8403
AT5G51010			Rubredoxin-like superfamily pr...		Lus10022430 [exp]	4.9	0.8052
AT1G67570			Protein of unknown function (D...		Lus10043011 [exp]	7.7	0.8187
					Lus10026314 [exp]	8.8	0.8166
AT3G18280			Bifunctional inhibitor/lipid-t...		Lus10017616 [exp]	9.5	0.8109
AT2G35880			TPX2 (targeting protein for Xk...		Lus10029355 [exp]	10.5	0.7996
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10002000 [exp]	11.3	0.8137
AT1G09310			Protein of unknown function, D...		Lus10018630 [exp]	15.2	0.7826
					Lus10010492 [exp]	16.4	0.8010
AT4G09830			Uncharacterised conserved prot...		Lus10028692 [exp]	19.9	0.8051

Compare expression of checked genes

Lus10011215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.