Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61105 228 / 1e-76 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT1G52900 207 / 4e-68 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT5G48770 72 / 1e-14 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G72840 70 / 7e-14 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT1G57670 68 / 2e-13 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT1G09665 64 / 5e-13 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT1G17615 66 / 1e-12 Disease resistance protein (TIR-NBS class) (.1) AT4G09430 64 / 7e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G72930 61 / 8e-12 TIR toll/interleukin-1 receptor-like (.1.2) AT1G72860 64 / 9e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018470 [exp] 395 / 3e-142 AT1G61105 224 / 5e-75 Toll-Interleukin-Resistance (TIR) domain family protein (.1) Lus10007823 [exp] 82 / 7e-18 AT1G27170 322 / 3e-92 transmembrane receptors;ATP binding (.1.2) Lus10007829 [exp] 79 / 7e-17 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012311 [exp] 78 / 1e-16 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004747 [exp] 77 / 2e-16 AT5G36930 342 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10040576 [exp] 76 / 5e-16 AT1G27180 355 / 3e-103 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011741 [exp] 75 / 1e-15 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000423 [exp] 74 / 4e-15 AT1G27180 338 / 5e-95 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007821 [exp] 71 / 2e-14 AT5G36930 339 / 4e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G038200 [exp] 261 / 2e-89 AT1G61105 233 / 1e-78 Toll-Interleukin-Resistance (TIR) domain family protein (.1) Potri.011G046800 [exp] 253 / 3e-86 AT1G61105 230 / 1e-77 Toll-Interleukin-Resistance (TIR) domain family protein (.1) Potri.011G123100 [exp] 243 / 2e-82 AT1G52900 229 / 2e-77 Toll-Interleukin-Resistance (TIR) domain family protein (.1) Potri.001G403800 [exp] 242 / 5e-82 AT1G52900 233 / 3e-78 Toll-Interleukin-Resistance (TIR) domain family protein (.1) Potri.015G043501 [exp] 81 / 1e-17 AT1G27170 534 / 5e-176 transmembrane receptors;ATP binding (.1.2) Potri.005G004500 [exp] 77 / 2e-17 AT5G36930 152 / 3e-42 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.015G043600 [exp] 78 / 8e-17 AT1G27170 1195 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.019G017082 [exp] 76 / 4e-16 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001971 [exp] 74 / 2e-15 AT5G36930 427 / 3e-130 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019053 [exp] 74 / 2e-15 AT5G36930 655 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Lus10011216 pacid=23147145 polypeptide=Lus10011216 locus=Lus10011216.g ID=Lus10011216.BGIv1.0 annot-version=v1.0 ATGCAACGTGCAACCTCAGCAATAGCCAAGGCATCTACCAAGATCCTGTGCAACGCACCGAACGTCGACGTTTTCATCAACCACCGCGGGATAGACACCA AGAGGACGATCTCGGGCTTGCTTTACGACCGCCTGGCCTCTCCCAGGTCACGAATCAGTCCTTTCTTGGATAGCAAGAATATGAAGCCAGGGGACCTCCT GTTTGACAACATAAATGCCGCAATTCGAGTGTGTAAAGTTGGGGTCGCAGTGTTCTCCCCGAGGTACTGCGACTCGTACTTCTGCCTCCATGAGCTTGCC ATGCTCATGGAGAATAAGAAAAGGGTGATACCCATCTTCTGCGACGTGAAGCCCTCGGAGCTCCACGTCCCTAACAAGGGGGAGTGCTCGGAGGAGGAGA TGCGAAGGTTTAAGTATGCCCTTGAGGAGGCTAAATACACCGTCGGATTAGCCTTCGACACCCGGGAAGGGAACTGGTCCGAGTTCATGACGAAGGCAAC CGACGCCGTTTTGAAGAACTTGATAGAGGTTGAAGGGGAAAAGTTCGGGTACTCATACGAGAACCCGAACTATACCGTGCAGAAGGCCACGAAATATCGC AGCCGTTGA
AA sequence Show only first row Show all	>Lus10011216 pacid=23147145 polypeptide=Lus10011216 locus=Lus10011216.g ID=Lus10011216.BGIv1.0 annot-version=v1.0 MQRATSAIAKASTKILCNAPNVDVFINHRGIDTKRTISGLLYDRLASPRSRISPFLDSKNMKPGDLLFDNINAAIRVCKVGVAVFSPRYCDSYFCLHELA MLMENKKRVIPIFCDVKPSELHVPNKGECSEEEMRRFKYALEEAKYTVGLAFDTREGNWSEFMTKATDAVLKNLIEVEGEKFGYSYENPNYTVQKATKYR SR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61105			Toll-Interleukin-Resistance (T...		Lus10011216 [exp]	0	1
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10010873 [exp]	1.0	0.9811
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10008843 [exp]	1.4	0.9346
AT2G03360			Glycosyltransferase family 61 ...		Lus10037124 [exp]	4.7	0.7867
					Lus10028608 [exp]	5.7	0.7018
AT2G25344		LCR14	low-molecular-weight cysteine-...		Lus10014355 [exp]	6.2	0.8140
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10014056 [exp]	6.9	0.9048
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004856 [exp]	8.0	0.9048
AT2G39040			Peroxidase superfamily protein...		Lus10021957 [exp]	8.5	0.7469
					Lus10002332 [exp]	8.9	0.9048
AT3G05950			RmlC-like cupins superfamily p...		Lus10023351 [exp]	9.8	0.9048

Compare expression of checked genes

Lus10011216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.