Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27430 265 / 2e-75 CIP7 COP1-interacting protein 7 (.1.2) AT5G43310 204 / 2e-54 COP1-interacting protein-related (.1.2.3.4) AT3G14172 145 / 1e-35 unknown protein AT1G61100 139 / 1e-33 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) AT1G17360 113 / 1e-25 unknown protein AT1G72410 106 / 3e-23 COP1-interacting protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018471 [exp] 1236 / 0 AT1G61100 474 / 1e-155 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10032660 [exp] 317 / 2e-93 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10043092 [exp] 305 / 7e-90 AT4G27430 540 / 2e-175 COP1-interacting protein 7 (.1.2) Lus10025112 [exp] 237 / 1e-73 AT1G61100 50 / 8e-08 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10021172 [exp] 205 / 1e-54 AT5G43310 834 / 0.0 COP1-interacting protein-related (.1.2.3.4) Lus10011809 [exp] 188 / 3e-49 AT5G43310 839 / 0.0 COP1-interacting protein-related (.1.2.3.4) Lus10013178 [exp] 142 / 4e-34 AT3G28860 889 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10008140 [exp] 138 / 4e-33 AT1G72410 585 / 0.0 COP1-interacting protein-related (.1.2) Lus10000225 [exp] 117 / 2e-28 AT4G21760 189 / 1e-55 beta-glucosidase 47 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G046900 [exp] 540 / 2e-179 AT1G61100 484 / 6e-158 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.004G038300 [exp] 531 / 3e-176 AT1G61100 462 / 1e-149 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.011G122900 [exp] 366 / 4e-111 AT4G27430 649 / 0.0 COP1-interacting protein 7 (.1.2) Potri.008G168300 [exp] 214 / 2e-57 AT5G43310 891 / 0.0 COP1-interacting protein-related (.1.2.3.4) Potri.010G070200 [exp] 212 / 6e-57 AT5G43310 892 / 0.0 COP1-interacting protein-related (.1.2.3.4) Potri.003G070400 [exp] 139 / 1e-33 AT3G14172 544 / 3e-170 unknown protein Potri.001G164900 [exp] 138 / 4e-33 AT3G14172 521 / 1e-161 unknown protein Potri.001G403700 [exp] 114 / 8e-26 AT4G27430 366 / 6e-109 COP1-interacting protein 7 (.1.2) Potri.019G064000 [exp] 77 / 5e-14 AT3G14172 99 / 8e-21 unknown protein Potri.013G091900 [exp] 75 / 1e-13 AT3G14172 122 / 7e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011217 pacid=23147150 polypeptide=Lus10011217 locus=Lus10011217.g ID=Lus10011217.BGIv1.0 annot-version=v1.0 ATGGATTCCTCTGTTGTTCTTGACCACGCTCTGTTTCAGCTCACCCCGACTCGAACCCGATGTGATCTGATCGTGTTCTACGGAGGGAAGCTGGAGAAGC TGGCTTCTGGGTTATTCGAGCCTTTCGTATCTCATCTCGAGTTCGCTCGGGACGAGAATTCGAAAGGTGGGTACTCGATCAAGCTCTGCCCTCCTAACCG GTTTGCTCCCTGGTTCACCAAATCCACCTTCCACAGATTTGTGCGGTTTGTTAGTACTCCGGCTGTTCTTGAGAGGTTTGTTAGCCTTGAGTGCGAAATC CTGCAGATTGTTGAGAGCTCTGCTCAAGCCAATGAAGGATCCGATGAAAGCAAGAAAGACGAAGCAACTCCTCCTAAGCAAGAGAATTCCAAGGTTCAGT TCCAGAGGCTGCTCGAAACCCGGAAATCGATGCTCCGCAAAGAGCAAGCGATGGCATATGCTAGAGGAATCGTTGCGGGGTTCGAACCGGACAAGCTAGA CGATCTGATTTTGTTTTCCGAAGCGTTTGGGGCAGCCAGGTTAAGGCAGGCTTGCATCAACTTCAAGGAGCTGTGCATAAAGAAGAGTGGCGATGGTTTG TGGATGAAGGAATTGGCAGCAATGGAGGCTTATGCTCCTGCTGATCTCGCATTCACTCCGGCATCGGGGATCGTGCTTACTAACGAAGGGTCACCGGATG GTTCAGTTGTTGATTTGCTGACTAACCCAGACGAAGCTTCTACGCCGAAAGTTCGAGTGGGAATGCCATGGCAGCAGCAGAATCATCAGATGCCACCATA CATGTACAATTTCCAGCAGATGCATCATCCATATCCGTATCCTCATCCGATGCAGCCGTATCCTCCTCAGTACGGGATGAGCATGCAATGGCCTACGAGC CGGAGAGAATCAAGTCCGAGGAAGCACCGTAGCAGGAAAGAAAAACGGTATTCAAGCGAAGGAAGCGAGGATGATGATGAAGCGAGCGGTTCCGAATCAG AAAACGACTCGAAATCCGAAATTCGGGAAGACAAGAAGCAGGAGGATCAGCATACTTCCTCTGAAGATCCGGTCAAGAAGCATAACAGGAGGAAGAAGTC ATCATCCAAAACCGTAGTCATCCGGAATATAAACTACATTACTTCCAAGAGAAGGAACGATAGATCCTCTTCGGCTGAAGAGGACAACGAAGGGTTTGTC GATGAAGTGGTTGGATCGTTAGGGAAGATGAATGTATCGAAGTCGAAGAAAGGTTCAAAGACGAGCGATGAAACAGATGGATATATGCAGGAGAATGATG CCTTGGGTTCCAAGGGATCCGAGAAGGGGAAGACGAATGACAACTGGGAGTCTTTCCAGAATCTTCTAATGAGAGACGAGGAGCCAGGAGACATTATCAA CGGAGCCGAAACTTTTGAATCGGAGAAAGCACCACCAAAGCGGAAGGTTCCTGCTGCAAATGATGCCTTCCTTATAAACAAGGGAGGTGATCAGCCAAAT GGAAATGGAAGAACGTCCGAGGAGGACTTCATGAACTCGGAGAACCAACGTTCGGTAATTAAGAGGACAGATCATACAGACGAAGATCTCGTCATTTCGC GAGGATTTGATGGATCGAGAAGTGGATTAGCTGATGTTCTATCTTCAAGTGAAAGCCTTTCATCATCCAGAGTGAAGCCTGGAAAGGGAGGGGAAGATTG GTTTGTGGCCAATAATCATTCAGTGACTAACAATGAAGAAGCAATGCTCAATGGAGATTACATTGTTGGAGTGGAAACCAATTCTGCAGCAAAAGGAGAC AAGATTGCGAGAGACAGATTGGTCGACGATTCGTTCATGTTAGATGCTGCTCGGCCAGCTGCTGATGATCAGTATAACTCTCCTTGGAGAACAGACATAG CCATGGCTGCAGATATTTCGTTGTCCTCTTCGTCTCCACTCGAAAATGGGAATGTCAAAGAGAAGAGTACTCAGAGTAGATCGGAGCCGGTTGATCTGTG CATGGTACTAGAAAGGGAATCAGGGTTCGAATCGGTTAGAGAATCCTGGTCTAATACTGATCATGGCATGGACATATCATTCATGGAAGCTGAAACTCGG AAACCAATCATCGCTAAGGAGGAAGAGATTCAACCTATCTCAGAAAAGCCAGTGTCTAAGAAGGGCGAGACGAAACCGAAAAAGGTTCTCAGCAGAGCGA GAACCTCGATCATCAGCTCCGCACCCAAACGAGCGCCTCCACTGAAGCGGTCCGTGGCTCATAAGAGCAAGTTCGATATAGAGGAAGAGGCGAGGAAAAA GGCAGAGGAAATCGCGATGCAGCGGCAGAAGAGGATAGCAGAAAGAACAGCGGCAGCAGCAGCAGCAGGAAGTAAGAAAGTCCAAGCAAGCACTGCTGGC AGGAGCAGTTCTGTGAAAATCAGAGCGGTTTAA
AA sequence Show only first row Show all	>Lus10011217 pacid=23147150 polypeptide=Lus10011217 locus=Lus10011217.g ID=Lus10011217.BGIv1.0 annot-version=v1.0 MDSSVVLDHALFQLTPTRTRCDLIVFYGGKLEKLASGLFEPFVSHLEFARDENSKGGYSIKLCPPNRFAPWFTKSTFHRFVRFVSTPAVLERFVSLECEI LQIVESSAQANEGSDESKKDEATPPKQENSKVQFQRLLETRKSMLRKEQAMAYARGIVAGFEPDKLDDLILFSEAFGAARLRQACINFKELCIKKSGDGL WMKELAAMEAYAPADLAFTPASGIVLTNEGSPDGSVVDLLTNPDEASTPKVRVGMPWQQQNHQMPPYMYNFQQMHHPYPYPHPMQPYPPQYGMSMQWPTS RRESSPRKHRSRKEKRYSSEGSEDDDEASGSESENDSKSEIREDKKQEDQHTSSEDPVKKHNRRKKSSSKTVVIRNINYITSKRRNDRSSSAEEDNEGFV DEVVGSLGKMNVSKSKKGSKTSDETDGYMQENDALGSKGSEKGKTNDNWESFQNLLMRDEEPGDIINGAETFESEKAPPKRKVPAANDAFLINKGGDQPN GNGRTSEEDFMNSENQRSVIKRTDHTDEDLVISRGFDGSRSGLADVLSSSESLSSSRVKPGKGGEDWFVANNHSVTNNEEAMLNGDYIVGVETNSAAKGD KIARDRLVDDSFMLDAARPAADDQYNSPWRTDIAMAADISLSSSSPLENGNVKEKSTQSRSEPVDLCMVLERESGFESVRESWSNTDHGMDISFMEAETR KPIIAKEEEIQPISEKPVSKKGETKPKKVLSRARTSIISSAPKRAPPLKRSVAHKSKFDIEEEARKKAEEIAMQRQKRIAERTAAAAAAGSKKVQASTAG RSSSVKIRAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61100			disease resistance protein (TI...		Lus10011217 [exp]	0	1
AT1G61100			disease resistance protein (TI...		Lus10018471 [exp]	1.0	0.8983
AT5G19010		ATMPK16	mitogen-activated protein kina...		Lus10041234 [exp]	5.0	0.7818
AT1G21000			PLATZ transcription factor fam...		Lus10035554 [exp]	6.7	0.7875
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10024179 [exp]	6.9	0.7424
AT5G01990			Auxin efflux carrier family pr...		Lus10003240 [exp]	7.5	0.7797
AT4G37590		MEL1, NPY5	NAKED PINS IN YUC MUTANTS 5, M...		Lus10011525 [exp]	8.3	0.7204
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10033072 [exp]	10.1	0.7962
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10018427 [exp]	10.5	0.7699
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Lus10009263 [exp]	11.0	0.7716
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Lus10033945 [exp]	11.7	0.7817

Compare expression of checked genes

Lus10011217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.