Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022939 [exp] 144 / 2e-42 AT1G52490 56 / 2e-08 unknown protein Lus10022937 [exp] 143 / 2e-42 AT1G52490 56 / 2e-08 unknown protein Lus10011210 [exp] 79 / 2e-17 AT1G32420 87 / 7e-19 F-box and associated interaction domains-containing protein (.1) Lus10018460 [exp] 77 / 2e-17 AT1G32420 66 / 9e-12 F-box and associated interaction domains-containing protein (.1) Lus10013934 [exp] 76 / 2e-16 AT1G11270 72 / 7e-14 F-box and associated interaction domains-containing protein (.1.2.3) Lus10015432 [exp] 73 / 8e-16 ND 37 / 2e-05 Lus10011186 [exp] 72 / 3e-15 AT3G06240 45 / 3e-05 F-box family protein (.1) Lus10007277 [exp] 72 / 4e-15 AT3G04660 82 / 6e-17 F-box and associated interaction domains-containing protein (.1) Lus10007285 [exp] 72 / 4e-15 AT3G04660 82 / 7e-17 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011218 pacid=23147154 polypeptide=Lus10011218 locus=Lus10011218.g ID=Lus10011218.BGIv1.0 annot-version=v1.0 ATGCAAGGCGGCGGCCATTTGAGAGAGAGAGAGACAGGGGAGCCACCGATAGGAGGTGGTGGTCGGAAGATAAAAAGCTTTTGGCGGACGGGGCTGGGGA AATTTCCGGCGGGGTCAATCAGTTGGAGAATAATTGATGCTGTAGTACCTCCTAGATTTGAATTCATTAAGAGTAAGTATGTCAATGGTTCCATCTATTG GATGACCCACTACTGGGGTGGATACTGGGGTGGACTAGGACAAACTATTGAAGACGAATGGAGGTATTCCGAATCCTTAGCGGCATTTGACATTGGACCG GAGAAGTTTAGGACGACGAGGATTCCCGAATTCACACTTTCAGGAAGTTACCGGTCCCCCGACGACTTTATAATAGCATTCGATGGGTGTCCAACTGTGT TGCGTAGCGCAAGATCGCCAACACAGAAGCTTATGGAAATTCCGCGATCGTGA
AA sequence Show only first row Show all	>Lus10011218 pacid=23147154 polypeptide=Lus10011218 locus=Lus10011218.g ID=Lus10011218.BGIv1.0 annot-version=v1.0 MQGGGHLRERETGEPPIGGGGRKIKSFWRTGLGKFPAGSISWRIIDAVVPPRFEFIKSKYVNGSIYWMTHYWGGYWGGLGQTIEDEWRYSESLAAFDIGP EKFRTTRIPEFTLSGSYRSPDDFIIAFDGCPTVLRSARSPTQKLMEIPRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011218 [exp]	0	1
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10035616 [exp]	1.4	0.9963
AT2G17030			F-box family protein with a do...		Lus10022619 [exp]	2.0	0.9961
AT1G62310			transcription factor jumonji (...		Lus10004603 [exp]	2.4	0.9313
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	3.9	0.9854
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	4.5	0.9854
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	5.0	0.9854
AT1G23540		IGI1, AtPERK12	proline-rich extensin-like rec...		Lus10013014 [exp]	6.0	0.7898
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	6.5	0.9283
AT5G03620			Subtilisin-like serine endopep...		Lus10003254 [exp]	6.9	0.9213
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10028009 [exp]	7.1	0.8055

Compare expression of checked genes

Lus10011218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.