Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61150 367 / 5e-130 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) AT4G09300 208 / 9e-68 LisH and RanBPM domains containing protein (.1) AT1G11110 202 / 8e-65 LisH and RanBPM domains containing protein (.1) AT1G35470 44 / 6e-05 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) AT4G09340 43 / 9e-05 SPla/RYanodine receptor (SPRY) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018464 [exp] 466 / 4e-169 AT1G61150 392 / 9e-140 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Lus10004152 [exp] 62 / 1e-11 AT1G06060 275 / 2e-94 LisH and RanBPM domains containing protein (.1) Lus10005633 [exp] 61 / 4e-11 AT1G06060 275 / 2e-94 LisH and RanBPM domains containing protein (.1) Lus10001544 [exp] 53 / 6e-08 AT1G35470 604 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009451 [exp] 48 / 3e-06 AT1G35470 601 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10016865 [exp] 40 / 0.0004 AT4G21520 95 / 7e-24 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G046200 [exp] 417 / 1e-149 AT1G61150 383 / 3e-136 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Potri.004G037600 [exp] 381 / 7e-136 AT1G61150 384 / 3e-137 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Potri.005G233000 [exp] 64 / 4e-12 AT1G06060 201 / 3e-65 LisH and RanBPM domains containing protein (.1) Potri.002G029700 [exp] 62 / 1e-11 AT1G06060 283 / 1e-97 LisH and RanBPM domains containing protein (.1) Potri.019G080800 [exp] 51 / 3e-07 AT1G35470 610 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.013G108400 [exp] 48 / 3e-06 AT1G35470 607 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10607 [flax] [poplar] CLTH CTLH/CRA C-terminal to LisH motif domain CL0561 [flax] [poplar] LisH PF08513 [flax] [poplar] LisH LisH
Representative CDS sequence Show only first row Show all	>Lus10011219 pacid=23147170 polypeptide=Lus10011219 locus=Lus10011219.g ID=Lus10011219.BGIv1.0 annot-version=v1.0 ATGTCACTGTTCTGGATTGTTATTCGTCATCTTGCAGAGATCGAGGCGATGGCTGATTCAAAAAAGGTGATTACAAGGGAAGAGTGGGAAAAGAAGCTCA ATGACATCAAAATTCGGAAAGAAGATATGAATAAGTTGGTGATGAACTTCTTTGTCACAGAGGGTTATGTTGATGCTGCTGAAAAGTTCCAGCGAGAATC TGGAACAGAACCAGGTATAGATCTCGGAACTATTACTGATCGCATGGCTGTTAAGAAAGCAGTGCAGTGTGGAAATGTCGAGGATGCAATTGAGAAAGTC AATGATCTAAATCCCGAGATACTGGACACGAATCCACAACTCTTCTTCCATCTTCAGCAGCAGAGGCTTATCGAGCTTATCCGGAATGGTAAAATAGAAG AAGCCTTGGAGTTCGCTCAGGAAGAGCTTGCACCTAGAGGGGAAGAAAACCAAAGCTTCTTGGAAGAGCTGGAGAGAACAGTTTCACTACTGGCTTTCGA CGACGTATCAAAGTGCCCGGTCGGTGAACTCCTCGACATCTCACAGCGGCTAAAAACCGCGAGCGAAGTCAATGCAGCCATCCTCACCAGCCAGAGTCAC GAAAAGGAACCAAAGCTCCCCATCTTGTTGAAAAGGCTGATATGGACACAGAACAAACTCGACCAGAGAGCTGCCTACCCGAGAATCAACGACTTGTCTA CCGCCACGCTTGAAGACTCCGGAGTCTGA
AA sequence Show only first row Show all	>Lus10011219 pacid=23147170 polypeptide=Lus10011219 locus=Lus10011219.g ID=Lus10011219.BGIv1.0 annot-version=v1.0 MSLFWIVIRHLAEIEAMADSKKVITREEWEKKLNDIKIRKEDMNKLVMNFFVTEGYVDAAEKFQRESGTEPGIDLGTITDRMAVKKAVQCGNVEDAIEKV NDLNPEILDTNPQLFFHLQQQRLIELIRNGKIEEALEFAQEELAPRGEENQSFLEELERTVSLLAFDDVSKCPVGELLDISQRLKTASEVNAAILTSQSH EKEPKLPILLKRLIWTQNKLDQRAAYPRINDLSTATLEDSGV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61150			LisH and RanBPM domains contai...		Lus10011219 [exp]	0	1
AT1G66080			unknown protein		Lus10031356 [exp]	2.2	0.9278
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10038474 [exp]	4.0	0.9178
AT3G44610			Protein kinase superfamily pro...		Lus10006272 [exp]	4.2	0.8995
AT1G19480			DNA glycosylase superfamily pr...		Lus10010824 [exp]	6.7	0.9076
AT3G09350		Fes1A	Fes1A (.1.2.3)		Lus10003961 [exp]	10.7	0.8872
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10017397 [exp]	11.0	0.8925
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009039 [exp]	11.2	0.9027
AT4G03120			C2H2 and C2HC zinc fingers sup...		Lus10011434 [exp]	11.3	0.8878
AT4G29870			Oligosaccharyltransferase comp...		Lus10035623 [exp]	13.0	0.9041
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10006240 [exp]	14.4	0.8918

Compare expression of checked genes

Lus10011219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.