Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11120 103 / 2e-28 unknown protein AT4G28170 73 / 6e-17 unknown protein AT1G09812 62 / 5e-13 unknown protein AT1G58007 61 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018462 [exp] 186 / 2e-61 AT1G11120 122 / 3e-36 unknown protein Lus10039796 [exp] 110 / 2e-31 AT1G11120 122 / 3e-36 unknown protein Lus10018564 [exp] 74 / 1e-17 AT1G11120 74 / 1e-17 unknown protein Lus10035787 [exp] 64 / 5e-13 AT1G09812 96 / 8e-26 unknown protein Lus10037361 [exp] 63 / 7e-13 AT1G09812 97 / 2e-26 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G037200 [exp] 128 / 2e-38 AT1G11120 147 / 9e-46 unknown protein Potri.011G045900 [exp] 118 / 2e-34 AT1G11120 133 / 2e-40 unknown protein Potri.019G103800 [exp] 113 / 2e-32 AT1G11120 119 / 5e-35 unknown protein Potri.003G006900 [exp] 77 / 9e-19 AT1G09812 105 / 6e-30 unknown protein Potri.004G224200 [exp] 75 / 1e-17 AT1G09812 118 / 4e-35 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011221 pacid=23147115 polypeptide=Lus10011221 locus=Lus10011221.g ID=Lus10011221.BGIv1.0 annot-version=v1.0 ATGCTGGACGAAAATACCCACCACTCATCTCCGACGACCAATATTGTATCTTCATGGCCGCCGGTGGGATCCCCTGTTCCGCCGGACACAACTTACCAGG AGGCAGAGCATTTGGGGCACTTCGACAACTCTGTCAATGCGGTGTCGTTTGGGTTCGTGGCGACTGCGATTCTCATCTCAATGTTCTTGGTCATGGCCAT CTTTGAAAGATTCCTCAGACCAGGGAATCCTTCTTCTGGAGATTCGAGGAATAACGGCGATGTTGATCTCGGCGGCAAGTTCAGATATCCTTCTCCCAAA ATGACGGTCTATGCAAATGGAGTGTCTGTATTGATGCCCGGAGACAAAATCCCTACATTTATAGCACATCCGGTGCCTGCTCCTGTTGTTGCTGCTCCCG AGCTAGATCCTTCGAGACCGCCGCCTTCTCCTCCTCCTCAAGAAGGTATAGTGTGA
AA sequence Show only first row Show all	>Lus10011221 pacid=23147115 polypeptide=Lus10011221 locus=Lus10011221.g ID=Lus10011221.BGIv1.0 annot-version=v1.0 MLDENTHHSSPTTNIVSSWPPVGSPVPPDTTYQEAEHLGHFDNSVNAVSFGFVATAILISMFLVMAIFERFLRPGNPSSGDSRNNGDVDLGGKFRYPSPK MTVYANGVSVLMPGDKIPTFIAHPVPAPVVAAPELDPSRPPPSPPPQEGIV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11120			unknown protein		Lus10011221 [exp]	0	1
AT3G22540			Protein of unknown function (D...		Lus10010564 [exp]	5.8	0.8132
AT5G56510		APUM12	pumilio 12 (.1)		Lus10018710 [exp]	9.6	0.7149
AT1G11120			unknown protein		Lus10018462 [exp]	9.9	0.7241
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Lus10039486 [exp]	11.5	0.7593
					Lus10010492 [exp]	14.7	0.7843
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10017708 [exp]	15.8	0.8458
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10042922 [exp]	29.7	0.7177
AT1G70250			receptor serine/threonine kina...		Lus10032228 [exp]	37.5	0.7833
AT2G35760			Uncharacterised protein family...		Lus10039060 [exp]	43.7	0.7198
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10031276 [exp]	54.7	0.7366

Compare expression of checked genes

Lus10011221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.