Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20850 536 / 0 SRF1 STRUBBELIG-receptor family 1 (.1) AT4G22130 444 / 5e-147 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT1G53730 442 / 3e-146 SRF6 STRUBBELIG-receptor family 6 (.1.2) AT3G13065 361 / 3e-115 SRF4 STRUBBELIG-receptor family 4 (.1) AT4G03390 362 / 2e-114 SRF3 STRUBBELIG-receptor family 3 (.1) AT1G11130 333 / 1e-103 SRF9, SCM, SUB STRUBBELIG-RECEPTOR FAMILY 9, SCRAMBLED, Leucine-rich repeat protein kinase family protein (.1) AT3G14350 299 / 9e-92 SRF7 STRUBBELIG-receptor family 7 (.1.2.3) AT1G78980 274 / 3e-82 SRF5 STRUBBELIG-receptor family 5 (.1) AT5G06820 246 / 1e-71 SRF2 STRUBBELIG-receptor family 2 (.1) AT3G58690 216 / 1e-63 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018459 [exp] 1140 / 0 AT4G03390 594 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10018563 [exp] 575 / 0 AT4G03390 773 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10033711 [exp] 575 / 0 AT4G03390 825 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10039795 [exp] 378 / 8e-121 AT4G03390 892 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10031628 [exp] 370 / 3e-117 AT4G03390 870 / 0.0 STRUBBELIG-receptor family 3 (.1) Lus10015549 [exp] 331 / 2e-101 AT4G22130 972 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10020030 [exp] 307 / 2e-94 AT4G22130 947 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Lus10003926 [exp] 304 / 4e-93 AT1G53730 885 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Lus10037464 [exp] 300 / 4e-92 AT1G53730 824 / 0.0 STRUBBELIG-receptor family 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G037000 [exp] 656 / 0 AT4G03390 645 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.011G010500 [exp] 450 / 3e-149 AT4G22130 916 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.011G045600 [exp] 404 / 4e-131 AT4G03390 617 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.019G103900 [exp] 378 / 2e-120 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.013G144600 [exp] 367 / 1e-116 AT4G03390 783 / 0.0 STRUBBELIG-receptor family 3 (.1) Potri.004G005301 [exp] 327 / 5e-102 AT4G22130 906 / 0.0 STRUBBELIG-receptor family 8 (.1.2) Potri.006G190700 [exp] 323 / 2e-100 AT5G06820 696 / 0.0 STRUBBELIG-receptor family 2 (.1) Potri.001G161600 [exp] 310 / 1e-95 AT1G53730 590 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.003G073700 [exp] 306 / 5e-94 AT1G53730 575 / 0.0 STRUBBELIG-receptor family 6 (.1.2) Potri.007G002600 [exp] 287 / 3e-87 AT1G78980 499 / 1e-168 STRUBBELIG-receptor family 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011223 pacid=23147104 polypeptide=Lus10011223 locus=Lus10011223.g ID=Lus10011223.BGIv1.0 annot-version=v1.0 ATGGCGTTTCTCAACTGGGTCGTCTTCTTCTTCTCTGTTCTGCATCTTGCCGCTGCTGAAACTGACCCTCGCGACGCTGCTGCTGTGAACAGCTTGTACA TCTCGTTCAACTCGCCGCCATTGCAAGGGTGGACGAGCTTTGGTGGAGATCCTTGTGGGGAGCTGTGGGAAGGCGTCAGCTGTGTCTTCTCCAACGTTAC TGCTCTGAAGCTGAATGGGATGAATCTTGGTGGTACATTGGACAATGCCATAGAACTCTTTGATTCCATTATAGAAATTGATCTTAGCAATAACCATATA GGAGGGAGCATTCCAACCAATCTTCCACCTACATTGAGAAACCTCTCTCTAGCTGGCAATCAGTTCAACGGAAGCATCCCGGGGACGCTATCGTCTTTGA CTCAATTGGCTAACTTGTTATTGAATAACAATGCTCTGACCGGAGGGATCCCAGATTCGTTTCAACAGCTTACTAGCTTAGTAAACTTAGACTTGTCTTT CAACAACTTGAGCGACATCTTGCCACCGATCGGAAGTTTGTCGTCCCTTACCTCCCTGCATTTGCAGAACAATCGACTAATCGGTACCCTCGATGCTCTT GAGGATCTTCCACTTCAGGACCTGAATGTAGAGAACAATCTATTTTCGGGGCCTATACCCTCGAAGATGATGAGCATTCCAAATTTCAGGAGAGATGGAA ATCCATTCAATACAACAATTCTCCCTTCTCCGCCTGCACCAATGCTTCCATCTCCAGCTCTCCAACCTTCGCCATCTATCTCTGCAAACCCACCTTGGAT ATCCGGACTCGGACCTTCTTCTCCAGAGAAGCAAGGCCCTGAGAAACAAAGTGAGGCCTTGTCATCATCATCTCATAAGAAGACCATTTTGTTTGCAGCG TGCGGGACAGCAGCATTCGTCCTGCTAGGATTGTGTGTCGGCTTGCCTTTATACTGCAAGAAGAGATACCTTGGACAACACGACCCCGAAAAGCTCGAGT TACAGGATCAAGATAATAAGCCTTATCTGCAAGGGGGGAATAAAATGGTTTCGAATAACTCGATGAATGCTGCATCGTTACTGCCATGCCCTCCTGGAAA GCTCACCATTGCGGTCAAAGAATCATACAATACTACCGGCTCGAGTGTTTCCTCTTCTGGAGGAGTTTTCACCATTGCAACTCTCCAGCAGTGTACGAAC AGCTTCTCTGAACAGAATTTTGTTGGAGAAGGCCTGCTCGGTCCTGTCTACAGGGCCGAGCTTCCTGATGGAAAGCTTTTGGCAGTGAAGAAGCTGAACA GCACGATAATCAACGATGACGAGCAGTTTCTTGGTCTGGTCTCGACCGTCTCTACAATCAAGCATCCTAACATCGTGGAGCTCGTGGCACACTGCCTCGA GCATGGACATAGACTGTTTGTGTACGAGTACTGCGAGAGTGGCACGCTGCATGATGCTTTGCATACGGATGAGGAGATGCAACGGAAGCTGTCGTGGAAC AAGCGCATCAGGCTTGCATTAGGAGCTGCCAGAGCCCTTCAGTATCTTCATGAAGTCTGCCAACCTCCAATGGTGCACCAAGATTTCAAGTCTGGAAACA TTCTCCTTGACTACCAGTTAGTGGCAAAGGTCTCGGATTGTGGCCTTGGGAGGTTAAAGTCATCAGCTAAGTCAGTCCAGCTCTCGGGACGAGATCCCAG CAATGCTCAAGGGTACAGTGCTCCGGAATTGGAGTTAGGAGGAAGCTACAGCTGCAAGAGCGATGTGTACAGTTTCGGAGTAGTGATTCTTGAACTCCTC ACAGGGAGAAAGTCCTATGACAGCTCGCGGGCTCGAGGGGAGCAGTATTTAGTACGATGGGCGATCTCCAAGCTCCACGACATCGACTCGTTGTCGAGGA TGGTCGATCCTTCGTTGGAGGGCTCGTACCCTGCCAAGTCGTTATCTCGCTTTGCCGATATAATCTCCAGATGCATTCAGTCGACTCCCGAGTTCCGGCC AGCAATGTCTGAAGTTGTGCAGGATCTTATGCAGATGATATGA
AA sequence Show only first row Show all	>Lus10011223 pacid=23147104 polypeptide=Lus10011223 locus=Lus10011223.g ID=Lus10011223.BGIv1.0 annot-version=v1.0 MAFLNWVVFFFSVLHLAAAETDPRDAAAVNSLYISFNSPPLQGWTSFGGDPCGELWEGVSCVFSNVTALKLNGMNLGGTLDNAIELFDSIIEIDLSNNHI GGSIPTNLPPTLRNLSLAGNQFNGSIPGTLSSLTQLANLLLNNNALTGGIPDSFQQLTSLVNLDLSFNNLSDILPPIGSLSSLTSLHLQNNRLIGTLDAL EDLPLQDLNVENNLFSGPIPSKMMSIPNFRRDGNPFNTTILPSPPAPMLPSPALQPSPSISANPPWISGLGPSSPEKQGPEKQSEALSSSSHKKTILFAA CGTAAFVLLGLCVGLPLYCKKRYLGQHDPEKLELQDQDNKPYLQGGNKMVSNNSMNAASLLPCPPGKLTIAVKESYNTTGSSVSSSGGVFTIATLQQCTN SFSEQNFVGEGLLGPVYRAELPDGKLLAVKKLNSTIINDDEQFLGLVSTVSTIKHPNIVELVAHCLEHGHRLFVYEYCESGTLHDALHTDEEMQRKLSWN KRIRLALGAARALQYLHEVCQPPMVHQDFKSGNILLDYQLVAKVSDCGLGRLKSSAKSVQLSGRDPSNAQGYSAPELELGGSYSCKSDVYSFGVVILELL TGRKSYDSSRARGEQYLVRWAISKLHDIDSLSRMVDPSLEGSYPAKSLSRFADIISRCIQSTPEFRPAMSEVVQDLMQMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10011223 [exp]	0	1
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10018459 [exp]	1.0	0.9456
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10012020 [exp]	2.0	0.9434
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10040956 [exp]	2.0	0.9349
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011585 [exp]	2.4	0.9370
AT5G44530			Subtilase family protein (.1)		Lus10038416 [exp]	3.2	0.9329
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10026993 [exp]	4.9	0.9163
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10020189 [exp]	5.5	0.9238
AT3G63430			unknown protein		Lus10003090 [exp]	5.5	0.9103
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10021034 [exp]	5.7	0.9083
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10039641 [exp]	6.2	0.9009

Compare expression of checked genes

Lus10011223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.