Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80930 259 / 5e-81 MIF4G domain-containing protein / MA3 domain-containing protein (.1) AT1G52325 66 / 2e-13 Initiation factor eIF-4 gamma, MA3 (.1) AT5G17930 57 / 2e-09 MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002210 [exp] 254 / 3e-80 AT1G80930 909 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10003392 [exp] 220 / 2e-67 AT1G80930 491 / 1e-162 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10019865 [exp] 51 / 4e-07 AT5G17930 621 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10014048 [exp] 51 / 4e-07 AT5G17930 720 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G121100 [exp] 254 / 6e-79 AT1G80930 879 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Potri.013G061400 [exp] 52 / 1e-07 AT5G17930 735 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02847 [flax] [poplar] MA3 MA3 domain
Representative CDS sequence Show only first row Show all	>Lus10011226 pacid=23147114 polypeptide=Lus10011226 locus=Lus10011226.g ID=Lus10011226.BGIv1.0 annot-version=v1.0 ATGTTTTTCACATTGGATCCTGATTACTCGGAGAACGAGAAGCGATACCACGACCTGAAAAGGAACATTCTTTGCGGAGGTTTTGATGATGATGATGATG ATGAAGAAGAAGAAGTAGAAGAAGAAGAGAATGATAATGAAGGGATAAAGGACGAGACAGAGACGAATCTGATCACTCTCAGAAGAAGTATCTACTTGAC GATACTGTCGACCCTGAATTTCGAAGAAGCGGGGCACAAACTGATGAATATCAAGCTCGAACCGGGTGAAGAGATTAAGATTTGTATCATGCTTCTAGAG TGCTGCAGGCAAGAGAAGACTTACAATAGATTCTACGGTCTCCTGGGGCAGAGGCTCTGCATGATGAACAGAATCTATCAAGAGAATTTCGACAAGTGTT TCGTTCGAAAGTACTCGACAGTTCACAGGCTCGAGGCGAACGAGCTGTGGAACGTAGCGATGTTCTTCACGCACTTGCTAGCCACTGATGCTCTCCCATG GCATGTAATGGGATACATACGTTTGACTGAAAAGGATACTACTTCTCGTATATTTGTTAAGTACCTGTTTCAGGAATTGTCAGGATGCCTGGGTATCGGG AACCTGAAGGACCGTCTTGAGTCTGCAGACAAGCCTTCAGCAGAGAAAACTACCAACACATTGTTCTACGACAACATTTGTCAATCTCAATCTTCGATCT AA
AA sequence Show only first row Show all	>Lus10011226 pacid=23147114 polypeptide=Lus10011226 locus=Lus10011226.g ID=Lus10011226.BGIv1.0 annot-version=v1.0 MFFTLDPDYSENEKRYHDLKRNILCGGFDDDDDDEEEEVEEEENDNEGIKDETETNLITLRRSIYLTILSTLNFEEAGHKLMNIKLEPGEEIKICIMLLE CCRQEKTYNRFYGLLGQRLCMMNRIYQENFDKCFVRKYSTVHRLEANELWNVAMFFTHLLATDALPWHVMGYIRLTEKDTTSRIFVKYLFQELSGCLGIG NLKDRLESADKPSAEKTTNTLFYDNICQSQSSI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80930			MIF4G domain-containing protei...		Lus10011226 [exp]	0	1
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10018098 [exp]	1.0	0.9502
					Lus10021684 [exp]	1.7	0.8469
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Lus10040425 [exp]	3.5	0.8001
AT3G10740		ATASD1, ARAF1, ...	ARABIDOPSIS THALIANA ALPHA-L-A...		Lus10031008 [exp]	4.5	0.7733
					Lus10032314 [exp]	6.3	0.8809
AT4G35620		CYCB2;2	Cyclin B2;2 (.1)		Lus10041092 [exp]	12.2	0.6947
					Lus10019938 [exp]	15.7	0.7103
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10014637 [exp]	18.3	0.7433
AT2G21100			Disease resistance-responsive ...		Lus10025067 [exp]	19.4	0.6105
					Lus10039990 [exp]	19.8	0.7433

Compare expression of checked genes

Lus10011226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.