Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61215 244 / 6e-76 BRD4 bromodomain 4 (.1) AT2G42150 111 / 3e-26 DNA-binding bromodomain-containing protein (.1) AT2G44430 91 / 3e-19 DNA-binding bromodomain-containing protein (.1) AT3G60110 84 / 5e-17 DNA-binding bromodomain-containing protein (.1) AT3G57980 71 / 9e-13 DNA-binding bromodomain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018457 [exp] 588 / 0 AT1G61215 288 / 6e-93 bromodomain 4 (.1) Lus10010335 [exp] 69 / 4e-12 AT2G44430 320 / 2e-100 DNA-binding bromodomain-containing protein (.1) Lus10031219 [exp] 65 / 5e-11 AT3G57980 177 / 3e-47 DNA-binding bromodomain-containing protein (.1) Lus10031796 [exp] 64 / 1e-10 AT2G44430 234 / 5e-67 DNA-binding bromodomain-containing protein (.1) Lus10021861 [exp] 50 / 3e-06 AT2G44430 147 / 6e-39 DNA-binding bromodomain-containing protein (.1) Lus10021860 [exp] 45 / 0.0001 AT2G44430 104 / 1e-24 DNA-binding bromodomain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G036900 [exp] 320 / 7e-105 AT1G61215 323 / 1e-105 bromodomain 4 (.1) Potri.001G013600 [exp] 67 / 1e-11 AT3G57980 127 / 2e-30 DNA-binding bromodomain-containing protein (.1) Potri.003G212500 [exp] 67 / 1e-11 AT3G60110 113 / 6e-26 DNA-binding bromodomain-containing protein (.1) Potri.T042048 [exp] 67 / 1e-11 AT3G60110 113 / 5e-26 DNA-binding bromodomain-containing protein (.1) Potri.001G229300 [exp] 57 / 2e-08 AT2G44430 301 / 4e-93 DNA-binding bromodomain-containing protein (.1) Potri.009G023100 [exp] 56 / 3e-08 AT2G44430 280 / 3e-85 DNA-binding bromodomain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10011227 pacid=23147096 polypeptide=Lus10011227 locus=Lus10011227.g ID=Lus10011227.BGIv1.0 annot-version=v1.0 ATGGGAGCTGCGACGGCGGCGGCGGCAGGGTGGGGAACTTGGGAGGAATTGCTGCTCGGAGGAGCAGTGCTCCGGCACGGGACCTGTGATTGGGACTTGG TGGCGGCGGAGCTCCGGCCCCGATTCGCCTGTCCTTACGATTGCACGGCGGAGGTTTGCAGATCGAAGTATGAGGACTTGCAGAAGCGTTACTCTGGTTG CAAAGCTTGGTTCGATGAGCTACGAAAGCAGCGGATGTCCGAGCTGAAAAGAGCTCTGGAGGCATCGGAGGGCTCTATTGGATCACTTGAAACAAAGATA GAGACACTCAAGGCGGAGAAGAAGGACGAAAAGTCACTAGCCGGCCACGATTCGACCAAGACCGAGTCGTCCCCATTACCTTCCGTGAAATCGGAAGAAA TAGTGGAGGAATCTTTGAGCAAAGATCCTTCCAAGGACGGACTATCTGCAGGGAGCTTCACTCAGGAGACCAAGACGAACTGGTCTCCTGAGTGTCGCCT TCCTGCATCACCGGAGGCCGAGGTCAAGCAAGAACCCTCGACCTCTCCGAAAGAGGATCAAAAGGTTGCCGGAGGACCGGTAGGGCTCTTGCTGAAAGGC AGGAGGGGGAAGAGGTCGAAGAGGAAGGTCTGCGGGAAGGAAGACGGTAGCGTGGAAGAGATCAGCGACGTGTTAGGTTCCTCCGACGTTTTAGTTGGTG GAGAAGTCGCCAGAGCCGATCGAGTTCCTGATCTCGTCACGATTTTCGACTCGATTGCTGAGCACAAATGTGCCACTGTCTTCCGCCGAAGGCTTGATAG CCAGAAAAGAGGAAGATACAAGAAGATGATATTGAGGCACGTAGACGTGGACACAATAAGGAGCAGAATCTCCAGCCTTTCCCTTACGTCAGCTAAAGAG CTCTTCAGAGACTTGCTGCTACTAGCCAACAACGCATTGGTCTTCTACTCGAGGACCACTCGAGAGTACAAGTCCGCGATGCTGCTGCGTGGCATCGTCA CCGCGAGCCTGCATCAGCACCTCAAGGACTACTACGTCAGCAAAGCTCTGGCTCCTCCAAGCGATCGAAAGAAGATGCCATCGAAAGGGTCGAACGGTGC TGATGATGGTGTTAAGAAGACCGAGGAGGAAGCGGAGGAGTTGCTGCTGACGATGAAACGGAAAGGGACTGGTCGGACGAAGAAGGGTGTTGTGATCACG ACAATGAGTGGTGATCGAAGATCGGAGGGTGTGACGGCCAAAGGGGGAAGGAAGAGGGCTAGGGTGAAGTGA
AA sequence Show only first row Show all	>Lus10011227 pacid=23147096 polypeptide=Lus10011227 locus=Lus10011227.g ID=Lus10011227.BGIv1.0 annot-version=v1.0 MGAATAAAAGWGTWEELLLGGAVLRHGTCDWDLVAAELRPRFACPYDCTAEVCRSKYEDLQKRYSGCKAWFDELRKQRMSELKRALEASEGSIGSLETKI ETLKAEKKDEKSLAGHDSTKTESSPLPSVKSEEIVEESLSKDPSKDGLSAGSFTQETKTNWSPECRLPASPEAEVKQEPSTSPKEDQKVAGGPVGLLLKG RRGKRSKRKVCGKEDGSVEEISDVLGSSDVLVGGEVARADRVPDLVTIFDSIAEHKCATVFRRRLDSQKRGRYKKMILRHVDVDTIRSRISSLSLTSAKE LFRDLLLLANNALVFYSRTTREYKSAMLLRGIVTASLHQHLKDYYVSKALAPPSDRKKMPSKGSNGADDGVKKTEEEAEELLLTMKRKGTGRTKKGVVIT TMSGDRRSEGVTAKGGRKRARVK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61215		BRD4	bromodomain 4 (.1)		Lus10011227 [exp]	0	1
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10026485 [exp]	10.0	0.9215
AT4G21920			unknown protein		Lus10001143 [exp]	10.4	0.9354
AT1G57610			Protein of unknown function (D...		Lus10034435 [exp]	11.5	0.9325
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Lus10017516 [exp]	12.0	0.9373
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10033852 [exp]	15.6	0.9277
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10015824 [exp]	15.7	0.9365
AT4G16850			unknown protein		Lus10015507 [exp]	15.9	0.9215
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10014068 [exp]	20.1	0.9335
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	20.5	0.9354
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10031195 [exp]	29.1	0.9257

Compare expression of checked genes

Lus10011227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.