Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61240 494 / 6e-172 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) AT1G11170 478 / 2e-165 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT4G12840 357 / 1e-118 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT4G18530 339 / 1e-111 Protein of unknown function (DUF707) (.1) AT3G27470 248 / 2e-76 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G67850 240 / 3e-73 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G24570 239 / 3e-73 Protein of unknown function (DUF707) (.1) AT1G08040 238 / 7e-73 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT2G28310 236 / 2e-72 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) AT3G26440 232 / 1e-70 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018456 [exp] 653 / 0 AT1G61240 504 / 1e-178 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10006728 [exp] 623 / 0 AT1G61240 533 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10038303 [exp] 614 / 0 AT1G61240 507 / 2e-179 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10041107 [exp] 298 / 7e-96 AT4G12840 416 / 7e-145 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10036434 [exp] 290 / 4e-92 AT4G12840 402 / 9e-139 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10002141 [exp] 300 / 6e-90 AT1G53140 1204 / 0.0 Dynamin related protein 5A (.1) Lus10008748 [exp] 246 / 2e-77 AT4G12840 294 / 7e-99 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10011414 [exp] 248 / 1e-76 AT1G67850 611 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10006472 [exp] 247 / 2e-76 AT1G67850 598 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G036800 [exp] 558 / 0 AT1G61240 535 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.011G045300 [exp] 556 / 0 AT1G61240 534 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.004G227700 [exp] 342 / 9e-113 AT4G18530 466 / 1e-164 Protein of unknown function (DUF707) (.1) Potri.014G175800 [exp] 335 / 2e-110 AT4G12840 482 / 1e-170 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.003G003100 [exp] 326 / 1e-106 AT4G18530 480 / 4e-170 Protein of unknown function (DUF707) (.1) Potri.019G053000 [exp] 318 / 1e-103 AT4G18530 444 / 4e-156 Protein of unknown function (DUF707) (.1) Potri.017G065200 [exp] 243 / 1e-74 AT3G27470 605 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.008G185600 [exp] 240 / 2e-73 AT1G67850 610 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.010G047200 [exp] 240 / 2e-73 AT1G67850 581 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.009G011000 [exp] 233 / 4e-71 AT2G28310 608 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05212 [flax] [poplar] DUF707 Protein of unknown function (DUF707)
Representative CDS sequence Show only first row Show all	>Lus10011228 pacid=23147142 polypeptide=Lus10011228 locus=Lus10011228.g ID=Lus10011228.BGIv1.0 annot-version=v1.0 ATGCAGCTTTGTGATGATAGCGCCATAAGAGAGGACTCGACCAACCTGGAGAGTGAGCTGGCTGTCAATGACGTCTATCAGGCCATGGAAATCACTAAAG CGGAATGCCATGTTCGATGTGGTATGCATGCATTTCAGCATAGTAGTTGTTTACGGTTCTGGCAATCTTTTGCTCAATTTTTGCAATATATGCAGCAGGG GAAATGTGGGTTCAAGGCGAGGCAGCTGCCCATGATGTTAGCTCTGTGTACAACGATGCTGTTTGTTGTGTATAGGACCACCCATTATCAGTATCAGCAA ACGGAGATGGAAGGGAAGTTGCATCCGTTTGATACAATAAAGGAATCAGCTTTTGCTTCCGGATTGCTGAATAGTCTGCCTCGTGGTATAGTAACGCCGC ACTCAGATATGGAGTTGAAGCCTTTATGGTCGACAAGTAATTCGAGATCAAAGACAGCAGTTCTTGCTCCTAGTCATCGCTATTTATTGGCAATGGCCGT GGGCATTACGCAGAAGAGAAATGTTGACATGGTTGTTCGAAAGTTTCTTCCAGCGAATTTTTCGGTTATGCTATTCCATTATGATGGTAACCTGGACGGA TGGTGGGATCTTGAATGGAGTAGCAAGGCTGTACACATAGTTGCTCATAATCAAACGAAATGGTGGTTTGCCAAGCGGTTTCTGCATCCAGCTGTGGTCT CCATATACGATTATATATTCCTCTGGGATGAAGACCTTGGCGTGCAGCATTTTCGTCCAGTAAGGTACTTGAATATTGTGAGGTCAGAAGGACTGGAGAT ATCTCAGCCCGCCCTGGACCCTAATTCTACCGAAATACACCATAGGATCACCATCCGAGCCAGAATGAAGAAGTTCCATAGAAGAGTCTACGATGTTAGA GGGAAAGTTAAGTGCTCGGATGCAAGCGATGGGCCACCATGCACCGGATTTGTAGAAGGGATGGCTCCAGTCTTTTCGAGGTCTGCCTGGTATTGTGCAT GGCATCTCATACAGAATGATCTTGTCCATGGATGGGGGATGGATATGAAACTGGGATATTGTGCACAGGGAGATCGAACAAAGAAGGTGGGAGTAGTCGA TAGCGAGTATGTTGTACACAAAGGAATACAATCATTAGGCGGAGGAAGCGGACCACCCGGAAAGAAGGCTCCAACTAACGACGAATCGTCCAAGGTAAAA CTACGCTTACCTAAGCCATCTAGCTGTTTCGATCCAAACTCGAAATGTACTAACCTCTTTTCCCTTGATCCTTTCGTCTTTTCCAGAAGCACATCGGAGG TTTGGACCCTCGGATGGAGTTCGGCCGAACAGATCAGGAGGCAATCGACATGGGAGCTTCAAATATTTAAGGACCGTTGGAACAGAGCCGTAAGACAAGA CAACCACTGGGTAGATCCCTTTCAAGTAGTTGTTGACATCGATCGTCGTTATCATCATAGAACTTCCATCTTGTTCTGTTACCTAGACAATGACTACTAT GTCCGTCCAAAGGGCACACCGGTTGCTTATTTCGTGCCCGGTTTCGAACCGAGGGGAAGAACATTGTTGGATATTCCTACATCATCGACGATCAGGAGGC AATCGACATGGGAGCTTCAAATATTTAAGGACCGTTGGAACAGAGCCGTAAGACAAGACAACCACTGGGTAGATCCCTTTCAAGGTATTCAAAGACGCAA AACTATAGAAAAGCACGCGAACAAGAAACAACAACAACAACAACAACGGCGCCACCATCACTAA
AA sequence Show only first row Show all	>Lus10011228 pacid=23147142 polypeptide=Lus10011228 locus=Lus10011228.g ID=Lus10011228.BGIv1.0 annot-version=v1.0 MQLCDDSAIREDSTNLESELAVNDVYQAMEITKAECHVRCGMHAFQHSSCLRFWQSFAQFLQYMQQGKCGFKARQLPMMLALCTTMLFVVYRTTHYQYQQ TEMEGKLHPFDTIKESAFASGLLNSLPRGIVTPHSDMELKPLWSTSNSRSKTAVLAPSHRYLLAMAVGITQKRNVDMVVRKFLPANFSVMLFHYDGNLDG WWDLEWSSKAVHIVAHNQTKWWFAKRFLHPAVVSIYDYIFLWDEDLGVQHFRPVRYLNIVRSEGLEISQPALDPNSTEIHHRITIRARMKKFHRRVYDVR GKVKCSDASDGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKKVGVVDSEYVVHKGIQSLGGGSGPPGKKAPTNDESSKVK LRLPKPSSCFDPNSKCTNLFSLDPFVFSRSTSEVWTLGWSSAEQIRRQSTWELQIFKDRWNRAVRQDNHWVDPFQVVVDIDRRYHHRTSILFCYLDNDYY VRPKGTPVAYFVPGFEPRGRTLLDIPTSSTIRRQSTWELQIFKDRWNRAVRQDNHWVDPFQGIQRRKTIEKHANKKQQQQQQRRHHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61240			Protein of unknown function (D...		Lus10011228 [exp]	0	1
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10022581 [exp]	3.2	0.9028
AT1G55210			Disease resistance-responsive ...		Lus10017228 [exp]	8.7	0.9069
AT3G57890			Tubulin binding cofactor C dom...		Lus10021031 [exp]	20.2	0.8557
AT2G45670			calcineurin B subunit-related ...		Lus10041384 [exp]	20.5	0.8915
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Lus10009939 [exp]	23.9	0.8821
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10018575 [exp]	24.1	0.9019
AT5G15640			Mitochondrial substrate carrie...		Lus10035134 [exp]	24.4	0.8779
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031118 [exp]	24.8	0.9020
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10023865 [exp]	26.5	0.8521
AT1G72230			Cupredoxin superfamily protein...		Lus10027043 [exp]	28.6	0.8887

Compare expression of checked genes

Lus10011228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.