Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61250 436 / 8e-156 SC3 secretory carrier 3 (.1.2) AT1G11180 426 / 1e-151 Secretory carrier membrane protein (SCAMP) family protein (.1), Secretory carrier membrane protein (SCAMP) family protein (.2) AT2G20840 388 / 6e-137 Secretory carrier membrane protein (SCAMP) family protein (.1) AT1G03550 365 / 9e-128 Secretory carrier membrane protein (SCAMP) family protein (.1) AT1G32050 350 / 5e-122 SCAMP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018455 [exp] 567 / 0 AT1G61250 440 / 2e-157 secretory carrier 3 (.1.2) Lus10038302 [exp] 504 / 0 AT1G61250 442 / 3e-158 secretory carrier 3 (.1.2) Lus10039794 [exp] 384 / 1e-134 AT2G20840 427 / 1e-151 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10018562 [exp] 377 / 3e-132 AT2G20840 429 / 1e-152 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10033712 [exp] 372 / 3e-130 AT2G20840 416 / 1e-147 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10031627 [exp] 365 / 2e-127 AT2G20840 406 / 2e-143 Secretory carrier membrane protein (SCAMP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G045100 [exp] 449 / 1e-160 AT1G61250 397 / 4e-140 secretory carrier 3 (.1.2) Potri.004G036600 [exp] 444 / 2e-158 AT1G61250 357 / 3e-124 secretory carrier 3 (.1.2) Potri.013G144700 [exp] 386 / 1e-135 AT2G20840 438 / 1e-156 Secretory carrier membrane protein (SCAMP) family protein (.1) Potri.019G104000 [exp] 383 / 1e-134 AT2G20840 426 / 2e-151 Secretory carrier membrane protein (SCAMP) family protein (.1) Potri.001G134100 [exp] 369 / 2e-129 AT1G32050 399 / 8e-142 SCAMP family protein (.1) Potri.003G099300 [exp] 362 / 7e-127 AT1G32050 393 / 2e-139 SCAMP family protein (.1) Potri.004G036700 [exp] 162 / 3e-49 AT1G61250 158 / 3e-48 secretory carrier 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04144 [flax] [poplar] SCAMP SCAMP family
Representative CDS sequence Show only first row Show all	>Lus10011229 pacid=23147127 polypeptide=Lus10011229 locus=Lus10011229.g ID=Lus10011229.BGIv1.0 annot-version=v1.0 ATGGCTGGCCGCTTCGATCCCAACCCTTTCGACGAAGAGGAAGTCAACCCTTTCTCAAAGGCTCCTGCTTCGAAATCAAGGCTTTCGTCACTGCCTCCGG AACCGGCAGGTTTCGGCTATAATCATGGTGCAACCGTTGACATTCCGATTGATTCATCCACGGTTCTTATTGTTGAAGGGTTTGTGCTGCAGGATTTGAG AAAGAAAGAGATTGAACTGCAGAGTAAGGAGGCTGAGCTTCGGAGGAGGGAACAGGACGTAAAACGACGGGAAGAGGCAGCTTCCAGAGCCGGAATACAG CTGGAGCAGAAGAATTGGCCACCGTTCTTTCCAATCATCCATCATGACATCGCAAATGAAATCCCGATTCACCTGCAAAGGATCCAGTACGTTGCTTTCT CGACATTTTTAGGATTGTCCCTCTGCCTTCTGTGGAATATCATTGCTGTGACAACAGCATGGATCAAGCATGAAGGGGTGAAGATATGGTTTCTTGCCAT CATCTACTTCATATCAGGAGTTCCAGGAGGCTATTTCTTGTGGTATCGCCCACTGTATCGTGCGTTCCGGACTGATAGTGCTCTCAAGTTTGGGTGGTTC TTCTTCTTCTATCTGATCCATATCGGCTTCTGCATCGTAGCTGCGGTTGCTCCTCCCATTTTCTTCAAAGGAAAATCCCTCACTGGCGTTCTCGCTGCAA TTGATGTCATAGGAGACAGCCTGCTAGTCGGGATCTTCTACTTCGTCGGGTTTGGTCTCTTTTGCGTCGAAATAATCCTCAGCATCTGGGTTCTTCAGCA AGTATACATGTACTTCCGCGGCAGTGGCAAGGCCGCTGAGGTCAGTCCTGATGCAGCCAGAGGAGCAGTCAGAGCAGCCATTTGA
AA sequence Show only first row Show all	>Lus10011229 pacid=23147127 polypeptide=Lus10011229 locus=Lus10011229.g ID=Lus10011229.BGIv1.0 annot-version=v1.0 MAGRFDPNPFDEEEVNPFSKAPASKSRLSSLPPEPAGFGYNHGATVDIPIDSSTVLIVEGFVLQDLRKKEIELQSKEAELRRREQDVKRREEAASRAGIQ LEQKNWPPFFPIIHHDIANEIPIHLQRIQYVAFSTFLGLSLCLLWNIIAVTTAWIKHEGVKIWFLAIIYFISGVPGGYFLWYRPLYRAFRTDSALKFGWF FFFYLIHIGFCIVAAVAPPIFFKGKSLTGVLAAIDVIGDSLLVGIFYFVGFGLFCVEIILSIWVLQQVYMYFRGSGKAAEVSPDAARGAVRAAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10011229 [exp]	0	1
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10036486 [exp]	1.4	0.9605
AT4G25770			alpha/beta-Hydrolases superfam...		Lus10001320 [exp]	3.0	0.9423
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10010203 [exp]	3.5	0.9341
AT3G01850			Aldolase-type TIM barrel famil...		Lus10035219 [exp]	5.1	0.9470
AT2G17990			unknown protein		Lus10041920 [exp]	5.5	0.9270
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009657 [exp]	5.7	0.9418
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10007925 [exp]	7.0	0.9319
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Lus10037292 [exp]	7.5	0.9220
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10006879 [exp]	8.5	0.9272
AT3G62220			Protein kinase superfamily pro...		Lus10009983 [exp]	8.8	0.9256

Compare expression of checked genes

Lus10011229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.