Plant FIBer expression Database

Lus10011230 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21620 76 / 2e-18 glycine-rich protein (.1.2)
AT1G61255 49 / 5e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018454
[exp]
90 / 2e-23 AT4G21620 80 / 3e-20 glycine-rich protein (.1.2)
Lus10006730
[exp]
72 / 2e-16 AT4G21620 70 / 3e-16 glycine-rich protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G045000
[exp]
75 / 7e-18 AT4G21620 69 / 1e-15 glycine-rich protein (.1.2)
Potri.004G036500
[exp]
68 / 8e-15 AT4G21620 65 / 7e-14 glycine-rich protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10011230 pacid=23147112 polypeptide=Lus10011230 locus=Lus10011230.g ID=Lus10011230.BGIv1.0 annot-version=v1.0
ATGACAACCAACACCAAAGTCTCTACCTTTCTCATCATCTTCCTCCTCATCATCTCACCCTCCATCTCAACCCGGCCCGAACCCGGTTCACCATCCGCCC
CGACCGGAGGAGCAGGAGACTTCTTCGGCCCGGGGACCGGGTTCGGGATACCCGACTTCGGCAAAGGGTGGGACATGGGAGGAGGAGGCGGGTACGGGTC
GGGTTATGGAGGCCCAAAAGGCGGAGGAGGCGGGTACGGGTCGGGTTACGGAGGCCCGAAAGGCGGCCACTCGAAGAGCGGAGTGTATAGGCCTACGGTG
GTGTGCAAGGAGAAAGGGCCGTGCTTGAACAAGAAGCTGAGGTGTCCGGCGAAGTGCTTCACGTCGTATAGCCGCTCCGGGAAGGGGTACGGCGGTGGAG
GCGGCGGCGGCGGGTGCACTATGGATTGTAAGAAGAAGTGTGTTGCTTACTGTTGA
AA sequence
>Lus10011230 pacid=23147112 polypeptide=Lus10011230 locus=Lus10011230.g ID=Lus10011230.BGIv1.0 annot-version=v1.0
MTTNTKVSTFLIIFLLIISPSISTRPEPGSPSAPTGGAGDFFGPGTGFGIPDFGKGWDMGGGGGYGSGYGGPKGGGGGYGSGYGGPKGGHSKSGVYRPTV
VCKEKGPCLNKKLRCPAKCFTSYSRSGKGYGGGGGGGGCTMDCKKKCVAYC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G21620 glycine-rich protein (.1.2) Lus10011230
[exp]
0 1
AT1G74780 Nodulin-like / Major Facilitat... Lus10036663
[exp]
6.4 0.8449
AT5G50260 CEP1 cysteine endopeptidase 1, Cyst... Lus10033040
[exp]
8.5 0.8697
AT4G19420 Pectinacetylesterase family pr... Lus10035682
[exp]
11.5 0.8964
AT2G37030 SAUR-like auxin-responsive pro... Lus10026521
[exp]
11.8 0.8956
AT3G03990 alpha/beta-Hydrolases superfam... Lus10018686
[exp]
22.8 0.8453
AT4G35690 Arabidopsis protein of unknown... Lus10028381
[exp]
24.3 0.8318
AT3G26510 Octicosapeptide/Phox/Bem1p fam... Lus10026700
[exp]
24.3 0.8915
AT2G37030 SAUR-like auxin-responsive pro... Lus10013808
[exp]
25.3 0.8768
AT3G04070 NAC ANAC047 NAC domain containing protein ... Lus10003269
[exp]
29.8 0.8945
AT2G45400 BEN1 NAD(P)-binding Rossmann-fold s... Lus10004028
[exp]
61.1 0.8214

Lus10011230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.