Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54390 446 / 6e-156 ATAHL, AHL HAL2-like (.1) AT5G63980 253 / 1e-79 SUPO1, RON1, ALX8, HOS2, FRY1, ATSAL1, SAL1 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) AT5G09290 219 / 2e-67 Inositol monophosphatase family protein (.1) AT5G64000 218 / 7e-67 ATSAL2, SAL2 Inositol monophosphatase family protein (.1) AT5G63990 205 / 6e-62 Inositol monophosphatase family protein (.1.2) AT4G05090 138 / 2e-36 Inositol monophosphatase family protein (.1) AT4G39120 42 / 0.001 HISN7, IMPL2 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018453 [exp] 842 / 0 AT5G54390 442 / 2e-154 HAL2-like (.1) Lus10038597 [exp] 524 / 0 AT5G54390 505 / 2e-180 HAL2-like (.1) Lus10037888 [exp] 509 / 2e-180 AT5G54390 497 / 6e-177 HAL2-like (.1) Lus10015663 [exp] 205 / 2e-61 AT5G63980 454 / 2e-159 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10037677 [exp] 188 / 4e-56 AT5G63980 420 / 9e-148 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10007817 [exp] 139 / 2e-36 AT4G05090 436 / 4e-152 Inositol monophosphatase family protein (.1) Lus10006739 [exp] 132 / 3e-34 AT4G05090 469 / 8e-166 Inositol monophosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G044900 [exp] 619 / 0 AT5G54390 502 / 2e-177 HAL2-like (.1) Potri.004G036400 [exp] 617 / 0 AT5G54390 497 / 7e-176 HAL2-like (.1) Potri.011G124700 [exp] 517 / 0 AT5G54390 489 / 4e-174 HAL2-like (.1) Potri.007G105100 [exp] 247 / 9e-78 AT5G63980 535 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.005G063900 [exp] 244 / 2e-76 AT5G63980 529 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.004G033200 [exp] 144 / 3e-38 AT4G05090 522 / 0.0 Inositol monophosphatase family protein (.1) Potri.016G011000 [exp] 42 / 0.0005 AT3G02870 440 / 5e-158 Inositol monophosphatase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [flax] [poplar] Phospoesterase PF00459 [flax] [poplar] Inositol_P Inositol monophosphatase family
Representative CDS sequence Show only first row Show all	>Lus10011231 pacid=23147098 polypeptide=Lus10011231 locus=Lus10011231.g ID=Lus10011231.BGIv1.0 annot-version=v1.0 ATGCCTTTAAATTGCTGGAGCTTGGCTTCCAGAGTCCCGCGTCTCCAGTTCTCACCACCCTACTCCTTAATCGGACTACGAGGGAAGTACCCATTGAACA AAACCCAGTTCATTCCTCATCGCGTCAAACTCAGACCGACTTACTCCTCTCTTCACTACTCATCCTCTGTATCGTCTCATTCTCCTGTCAAATTGGGTTC GAATACAATGGTGGAGGAGAAGTACTCGAAGGAGCTGGAGATTGCTGTCCGAGCTGTACAGATGGCTTGCTCACTATGTCAGAAAGTGCAGCATAAGTTG ATCACGAAAGCAGAGAATCAAGTTCAGGCGAAAGACGATGACTCTCCCGTTACCGTTGCTGATTGGAGTGTTCAAGCGACTGTGAGCTGGATTCTATGCT CAGCATTAGGGAGCAGCAACGTCTCAATCATAGCTGAAGAAGATGTTCAATCCTTGTCAAGAACAAGAGCAGCTGGGTTACTAGAGAGTGTAGTTCAGAC TGTGAATGAATGTCTGTCCGAAGCTTCCCGGTTCGGTTTTCAACCACCCGAAGCTCCTCTAGACACTCTACAGGTGCTCGAATCGATCAGCCGTTGTACA TCAACACGATCACCGCAATCTTCAACCTTTTGGGCGCTCGATCCTGTTGATGGGACCCTCGGGTTCGTACGTGGAGATCAGTACGCAGTTGCTCTGTCGC TGATCGAAGATGGGGAAGTTGTGGTTGGGGTTCTTGGCTGCCCTAATTACCCGATGAGGAAAGAGTGGCTCGGATACCACCATCGTTACCACAGGATAGT GTCGTGGATAGTGTCGAGGCTGACTCCACCGCAGGGCTCCGAGTCTTGGGACAAAGGGGGCGTGGTTTATGCTAGGAAGGGAAGTGGGGCGGCTTGGATG CAGCCGTTGGTGCAGGAACCGAAGAGCTTGGTGTGGCCTAATTTCGCCAAGCGAGTCAGGGTTTCTTCTGTCGATAATCCCGAGCTAGCTACGTTCTGTG AACCTGTTGAGAAGGCCAATTCTAGCCACTCCTTCACTGCTGGACTTGCTCACAGCGTTGGCCTTAGGAAGCAACCACTGAGAGTGTACAGCATGGTGAA GTACGCAACAATAGCTCGCGGAGACGCGGAGGTGTTCATGAAGTTTGCGAGGACCGGTTACAAGGAGAAGATATGGGACCATGCTGCGGGAGTAGTGATC GTCCAGGAGGCCGGAGGTGTGGTGACTGACGCAGGTGGGCGGCCGCTGGACTTCTCCGGCAGCGGTGTTTACTTAGAAGGGCTTGACAGAGGGATCATTG CTTCAGCTGGAGCTGAGTTGCATGACAAGATCATCAATGCTGTTGATGCCAGCTGGAACTCTTCCAGCTTGTGA
AA sequence Show only first row Show all	>Lus10011231 pacid=23147098 polypeptide=Lus10011231 locus=Lus10011231.g ID=Lus10011231.BGIv1.0 annot-version=v1.0 MPLNCWSLASRVPRLQFSPPYSLIGLRGKYPLNKTQFIPHRVKLRPTYSSLHYSSSVSSHSPVKLGSNTMVEEKYSKELEIAVRAVQMACSLCQKVQHKL ITKAENQVQAKDDDSPVTVADWSVQATVSWILCSALGSSNVSIIAEEDVQSLSRTRAAGLLESVVQTVNECLSEASRFGFQPPEAPLDTLQVLESISRCT STRSPQSSTFWALDPVDGTLGFVRGDQYAVALSLIEDGEVVVGVLGCPNYPMRKEWLGYHHRYHRIVSWIVSRLTPPQGSESWDKGGVVYARKGSGAAWM QPLVQEPKSLVWPNFAKRVRVSSVDNPELATFCEPVEKANSSHSFTAGLAHSVGLRKQPLRVYSMVKYATIARGDAEVFMKFARTGYKEKIWDHAAGVVI VQEAGGVVTDAGGRPLDFSGSGVYLEGLDRGIIASAGAELHDKIINAVDASWNSSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10011231 [exp]	0	1
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10035647 [exp]	1.7	0.9015
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Lus10025002 [exp]	2.0	0.8945
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10035648 [exp]	3.5	0.8922
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011403 [exp]	7.7	0.8372
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10036981 [exp]	9.5	0.8325
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10019756 [exp]	9.5	0.8262
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Lus10007613 [exp]	9.9	0.8161
AT4G15610			Uncharacterised protein family...		Lus10033972 [exp]	10.2	0.8540
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10000206 [exp]	11.0	0.8542
AT2G16980			Major facilitator superfamily ...		Lus10004157 [exp]	17.5	0.7966

Compare expression of checked genes

Lus10011231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.