Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11190 439 / 4e-152 ENDO1, BFN1 ENDONUCLEASE 1, bifunctional nuclease i (.1) AT4G21585 323 / 8e-107 ENDO4 endonuclease 4 (.1) AT1G68290 308 / 6e-101 ENDO2 ,ENDO 2 endonuclease 2 (.1) AT4G21590 290 / 4e-94 ENDO3 endonuclease 3 (.1.2) AT4G21600 283 / 4e-91 ENDO5 endonuclease 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018452 [exp] 578 / 0 AT1G11190 440 / 3e-157 ENDONUCLEASE 1, bifunctional nuclease i (.1) Lus10018451 [exp] 462 / 6e-161 AT4G21585 408 / 2e-144 endonuclease 4 (.1) Lus10034336 [exp] 295 / 9e-96 AT1G68290 391 / 5e-138 endonuclease 2 (.1) Lus10041437 [exp] 254 / 1e-80 AT1G68290 327 / 2e-113 endonuclease 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G044500 [exp] 500 / 3e-176 AT1G11190 440 / 5e-157 ENDONUCLEASE 1, bifunctional nuclease i (.1) Potri.011G044400 [exp] 345 / 2e-115 AT4G21585 448 / 3e-160 endonuclease 4 (.1) Potri.010G123500 [exp] 293 / 3e-95 AT1G68290 412 / 1e-146 endonuclease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0368 [flax] [poplar] PhosC-NucP1 PF02265 [flax] [poplar] S1-P1_nuclease S1/P1 Nuclease
Representative CDS sequence Show only first row Show all	>Lus10011232 pacid=23147151 polypeptide=Lus10011232 locus=Lus10011232.g ID=Lus10011232.BGIv1.0 annot-version=v1.0 ATGAGCTCTACTTCCATGCTGCTGTGGATCGGAGTTTTTCTACTTCTCCAATTTGTCACGGGAGCTCTCAGCTGGGGGAAAGAAGGTCACTACGCCGTTT GCAAGATCGCTGAAGCGAATGCAGCTGCTGCGGTGAACGAGCTGCTACCGGAGTACGCCGAAGGCGATCTGGAGAGTCTATGCTCTTGGGCGGACAACAT CAAGTGGCACTACCGGTGGAGCAGTGCTCTGCACTATGTGGATACGCCGGACTTCTTCTGCAACTATGAGTTCTCAAGCCATCGAAACTCGTGCGTGGTT GCAGCAATCTACAACTACACTGACCAGATCTCATCGGAATATCACAATCCTGGAGCGGTGACCAACTATAATCTGACTGAAGCACTGTTGTTCTTATCAC ATTTCATTGGTGACATCCATCAGCCCTTGCATGTTGGTTTTGCGGGAGATGAGGGTGGAAACACAATCATAGTTCACTGGTACACTAGAAAGGCTAATCT ACACCATGTTTGGGACACCAGCATCATAGAATCGGCCATGAGTACTTTCTATGATTCTGATCTCACAGCGATGATTAAATCCATTAGGAGTAATATAACG GACAATCAGCTGCCGTTATGGGGAGACTGCAGAGACAATGAAACCGTCTGTCCAAATAGGTTTGCATCTGAAAGCATTGGTTTGGCATGCAAGTATGCAT ACAGGAATGCCACACCAGGAAGCACTCTGAAAGAAAGGCTTGCCCAAGCCGGAGTTCGTCTGGCTGCTTCCCTCAACCGCATCTTTACTCCCAAAGCATC TGGTGAACTGAGTCAACTGGCCATTGAAGCTTTGGTGAGCTGGAAAAGAATGCGGGCATTTGGGTTAGTTTTGTTCATGGCTCTGGCCTTGGTCTTGGTA CCTGGAGCTGTGAGTTGGAGCAAGGAAGGTCACATGATCACATGTCGAATTGCACAGAATCTGTTGGAGCCGGAGGCAAAGCACGCCGTGGAGCAACTGT TGCCGGAAAATGTGAACGGAGACCTGTCAGCACTCTGTGTATGGCCGGACCAAATCAGGCATTGGTACAGATACAGATGGACTAGCCCACTCCACTTCAT CGACACCCCTGACGATGCCTGCACCTTTGACTATTCGAGGGACTGTGTTAAAGACCGTTGTGTAGCGGGTGCCATCCAAAACTTCACCTCTCAGCTCTCC CACTACAGAGAAGGCAGCACCGATCGGCGATACAACTTGACAGAAGCGTTACTGTTCTTGTCACACTTCATGGGAGACATACATCAGCCTATGCACGTCG GCTTCACCACCGATGAAGGTGGCAACACCATCGACCTCCGCTGGTTCCGCCACAAATCCAATCTTCACCACGTATGGGATAGGGAGATCATTCTCACGGC TCTTAAGGATTACTATGAAAACGACGTGGACCAACTCCAACAAGCAATAGAAGGAAACTTCACTGACGGAAGTTGGCATGACGACCTGTTGTCTTGGAAA GACTGCAACGATCTTCTTAACTGTCCCAACAAATATGCAGTGGAGAGCATAAACCTAGCTTGCAAATGGGCTTACAAAGGCGTGAAGGAAGGTCAAACTC TATCAGATGAATACTTCGAGTCGAGGATGCCGATCGTGATGAAACGCATAGCTCAAGGCGGAGTTCGCTTAGCTATGTACCTCAACACCCTCTTCGGCGA CCCCAAGAAGGCCGAACAAGCCGCTGCCGACGTAGAAATAAGAAGGAAGAGCCTTGCAGGAGATCTGTAA
AA sequence Show only first row Show all	>Lus10011232 pacid=23147151 polypeptide=Lus10011232 locus=Lus10011232.g ID=Lus10011232.BGIv1.0 annot-version=v1.0 MSSTSMLLWIGVFLLLQFVTGALSWGKEGHYAVCKIAEANAAAAVNELLPEYAEGDLESLCSWADNIKWHYRWSSALHYVDTPDFFCNYEFSSHRNSCVV AAIYNYTDQISSEYHNPGAVTNYNLTEALLFLSHFIGDIHQPLHVGFAGDEGGNTIIVHWYTRKANLHHVWDTSIIESAMSTFYDSDLTAMIKSIRSNIT DNQLPLWGDCRDNETVCPNRFASESIGLACKYAYRNATPGSTLKERLAQAGVRLAASLNRIFTPKASGELSQLAIEALVSWKRMRAFGLVLFMALALVLV PGAVSWSKEGHMITCRIAQNLLEPEAKHAVEQLLPENVNGDLSALCVWPDQIRHWYRYRWTSPLHFIDTPDDACTFDYSRDCVKDRCVAGAIQNFTSQLS HYREGSTDRRYNLTEALLFLSHFMGDIHQPMHVGFTTDEGGNTIDLRWFRHKSNLHHVWDREIILTALKDYYENDVDQLQQAIEGNFTDGSWHDDLLSWK DCNDLLNCPNKYAVESINLACKWAYKGVKEGQTLSDEYFESRMPIVMKRIAQGGVRLAMYLNTLFGDPKKAEQAAADVEIRRKSLAGDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10011232 [exp]	0	1
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10029469 [exp]	1.4	0.9087
AT3G14250			RING/U-box superfamily protein...		Lus10024093 [exp]	6.7	0.8897
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10020024 [exp]	6.8	0.9024
AT5G54570		BGLU41	beta glucosidase 41 (.1)		Lus10037988 [exp]	7.4	0.8821
AT1G53210			sodium/calcium exchanger famil...		Lus10033629 [exp]	10.7	0.8818
AT3G02430			Protein of unknown function (D...		Lus10036581 [exp]	11.8	0.8724
AT2G01300			unknown protein		Lus10004062 [exp]	12.2	0.8840
AT5G47860			Protein of unknown function (D...		Lus10042222 [exp]	20.7	0.8386
AT2G14095			unknown protein		Lus10035649 [exp]	21.9	0.8686
AT5G18980			ARM repeat superfamily protein...		Lus10034018 [exp]	22.0	0.8419

Compare expression of checked genes

Lus10011232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.