Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21580 479 / 9e-172 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) AT5G61510 119 / 2e-30 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G23740 111 / 9e-28 AOR alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT1G49670 89 / 2e-19 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT3G56460 82 / 2e-17 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT3G15090 75 / 5e-15 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G13010 73 / 2e-14 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT5G16970 62 / 1e-10 AT-AER alkenal reductase (.1) AT5G16990 60 / 5e-10 Zinc-binding dehydrogenase family protein (.1) AT5G63620 60 / 7e-10 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018450 [exp] 605 / 0 AT4G21580 503 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Lus10009658 [exp] 102 / 1e-25 AT5G61510 403 / 5e-142 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10009018 [exp] 107 / 2e-25 AT5G61510 513 / 1e-178 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10030615 [exp] 99 / 2e-23 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030873 [exp] 98 / 9e-23 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10028988 [exp] 94 / 1e-21 AT3G56460 508 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10003691 [exp] 89 / 6e-20 AT3G56460 504 / 1e-180 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10003495 [exp] 87 / 4e-19 AT3G15090 528 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10027904 [exp] 86 / 3e-18 AT1G49670 954 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G036100 [exp] 504 / 0 AT4G21580 525 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Potri.004G233800 [exp] 121 / 1e-31 AT5G61510 527 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.001G140600 [exp] 119 / 5e-31 AT5G61510 542 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.019G065700 [exp] 107 / 3e-26 AT3G56460 525 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.016G136100 [exp] 105 / 2e-25 AT1G23740 504 / 9e-180 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.009G103000 [exp] 91 / 8e-20 AT1G49670 943 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Potri.001G391100 [exp] 86 / 5e-19 AT4G13010 469 / 8e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G342800 [exp] 84 / 3e-18 AT4G13010 513 / 0.0 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G342900 [exp] 83 / 8e-18 AT4G13010 484 / 2e-173 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G373200 [exp] 82 / 2e-17 AT3G15090 515 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10011233 pacid=23147122 polypeptide=Lus10011233 locus=Lus10011233.g ID=Lus10011233.BGIv1.0 annot-version=v1.0 ATGAAAGCGGTGGTGATAAGCTCTCCCGGCGGCCCAGAGGTCCTGCAACTCCGGCAAGTAGACGACCCAACGATCCAAGACGATGAAGTCCTGATCAAGG TCGCCGCCACCGCCGTCAACCGGGCCGATACAATCCAGCGCCAAGGGAAGTATCCTCCTCCTAAAGGTTCCAGTGAGTACCTCGGCCTCGAATGTTCTGG CACCGTTGTAGCTGTTGGCCGGCTCGTTTCCACTTGGACACCCGGCGATCAGGTGTGTGCTCTTCTGAGCGGCGGAGGCTACGCGGAACAAGTGGCGGTT CCGGCGGCGCACGTTCTCCCTGTGCCAGCAGGTGTGTCTTTGACTGACGCAGCTGCTTTCCCTGAGGTTGCGTGTACGGTTTGGTCCACGATCTTCATGA CTAGCAGGCTCTCTCCAGGCGAATCACTTCTGGTTCATGGAGGTTCTAGCGGAATAGGTACATTTGCGATTCAGATAGTGAAACACTTGGGGAATCGAGT CTTTGTCACTGCAGGGAGTGATGAGAAATTAGCTGCTTGTAAGGATCTTGGAGCTGATGTTTGCATCAACTACAAGACTGAGGATTTCGTGGCTCGAGTC AAGGAAGAAACTGATGGAAAAGGGGTGGACGTGATCCTAGATTCCCTAGGAGCATCCTACTTCCAGAGGAACCTAGACAGCTTGAACTTCGACGGAAGGC TCTTCATAATCGGCATGATGGGAGGAGTCAAGGCCGAGATGAACCTGCCTTCTCTATTCGCCAAGCGCCTCACAGTGCAAGCTGCTGGTTTGAGATACAG GACTGCAGAGAACAAAGCCGCGATAGTGAGCGAGGTGAAGAAGCACGTCTGGCCGGCGATTGAGACAGGGAAAGTGAAGCCTGTGGTGTACAAGGTGTTT CCTTTGTCTAAGGCAGCTGAGGCTCATAAGCTCATTGGGAGTAGCCGGCATATTGGCAAAATCTTACTTGTTGCTTAA
AA sequence Show only first row Show all	>Lus10011233 pacid=23147122 polypeptide=Lus10011233 locus=Lus10011233.g ID=Lus10011233.BGIv1.0 annot-version=v1.0 MKAVVISSPGGPEVLQLRQVDDPTIQDDEVLIKVAATAVNRADTIQRQGKYPPPKGSSEYLGLECSGTVVAVGRLVSTWTPGDQVCALLSGGGYAEQVAV PAAHVLPVPAGVSLTDAAAFPEVACTVWSTIFMTSRLSPGESLLVHGGSSGIGTFAIQIVKHLGNRVFVTAGSDEKLAACKDLGADVCINYKTEDFVARV KEETDGKGVDVILDSLGASYFQRNLDSLNFDGRLFIIGMMGGVKAEMNLPSLFAKRLTVQAAGLRYRTAENKAAIVSEVKKHVWPAIETGKVKPVVYKVF PLSKAAEAHKLIGSSRHIGKILLVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21580			oxidoreductase, zinc-binding d...		Lus10011233 [exp]	0	1
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10002565 [exp]	4.1	0.9237
AT1G21770			Acyl-CoA N-acyltransferases (N...		Lus10025670 [exp]	4.2	0.9124
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Lus10006708 [exp]	6.5	0.9227
AT2G33320			Calcium-dependent lipid-bindin...		Lus10032780 [exp]	10.2	0.8670
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Lus10012593 [exp]	11.8	0.9014
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009658 [exp]	12.6	0.9119
AT1G31870			unknown protein		Lus10033140 [exp]	15.9	0.8928
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10004563 [exp]	15.9	0.8990
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Lus10013686 [exp]	16.0	0.8960
AT4G27880			Protein with RING/U-box and TR...		Lus10022405 [exp]	17.0	0.8951

Compare expression of checked genes

Lus10011233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.