Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22300 274 / 4e-89 AtNIT4, NIT4 nitrilase 4 (.1) AT3G44320 239 / 9e-76 AtNIT3, NIT3 nitrilase 3 (.1) AT3G44300 238 / 2e-75 AtNIT2, NIT2 nitrilase 2 (.1) AT3G44310 233 / 3e-73 NITI, NIT1, ATNIT1 A. THALIANA NITRILASE 1, nitrilase 1 (.1.2.3) AT2G27450 58 / 4e-09 CPA, ATNLP1, NLP1 nitrilase-like protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018449 [exp] 717 / 0 AT5G22300 281 / 6e-92 nitrilase 4 (.1) Lus10013313 [exp] 266 / 6e-86 AT5G22300 561 / 0.0 nitrilase 4 (.1) Lus10005201 [exp] 260 / 9e-84 AT5G22300 559 / 0.0 nitrilase 4 (.1) Lus10021322 [exp] 253 / 2e-79 AT5G22300 265 / 7e-85 nitrilase 4 (.1) Lus10011198 [exp] 102 / 2e-26 AT5G22300 62 / 3e-12 nitrilase 4 (.1) Lus10016999 [exp] 80 / 3e-17 AT5G22300 83 / 5e-19 nitrilase 4 (.1) Lus10020627 [exp] 59 / 1e-09 AT2G27450 556 / 0.0 nitrilase-like protein 1 (.1.2) Lus10011199 [exp] 50 / 2e-07 ND 36 / 0.002
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G074200 [exp] 306 / 2e-100 AT5G22300 358 / 1e-121 nitrilase 4 (.1) Potri.006G207700 [exp] 303 / 1e-99 AT5G22300 369 / 2e-126 nitrilase 4 (.1) Potri.004G199600 [exp] 273 / 1e-88 AT5G22300 578 / 0.0 nitrilase 4 (.1) Potri.004G201400 [exp] 60 / 1e-09 AT2G27450 548 / 0.0 nitrilase-like protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00795 [flax] [poplar] CN_hydrolase Carbon-nitrogen hydrolase
Representative CDS sequence Show only first row Show all	>Lus10011234 pacid=23147169 polypeptide=Lus10011234 locus=Lus10011234.g ID=Lus10011234.BGIv1.0 annot-version=v1.0 ATGGAGACGGCCGCCGAACCCTCCGATGAAAAAAAGCCGGCGACGGAGAGTCAGAGCGTAGCCACTCGAATCGACATTACGGAGTTCTGCTACTCGGCGA TCTCCATCCTCCAACGCGAACTGCGCCTGGAGAGCATTTCCGACGTGGTTCCCTGGCTCCTCGACCGGCTCCGACTTCAGACGGCCATCCGCGACTCCGG CGTACCCACATGCAACTCCCCGGCGTCGACATCGGAGATTCGGGTTGGAGAAATCTTCGTTCCCCGGCCCATACCGCCACCCAGGCTGCAAAGGGTGAGA GTCACTGTAGCTCAAGCCAGTACAGTGTTATTCGACACTCCTGCAACTCTAGAGAAGGCGGAGAAGATGATTAGCACCGCTGCTGCTCATTCCTCACGAT TGATTGTGTTCCCTGAAGCTTTTATCGGTGGATATCCACAGTTCTTGTTCAACGAATCTTCTGCTGGAGAGGAGGTAAAGATGAACGATGATGATCTTAA GAAGTATCGTGACTCCGCCATTGATTACCCTGGTCCCGAGGTTGAGAAGGTATCACAAATGGCAATGAAGTACGGGACCAACATGGTAATGGGAGTAGTC GAGAGAGCCGGATCGAAGCTCTTCAGCACGGTAATCTTCTTCGATTGGCGAGGGAGGCGACTAGGCCACCACAGGAAGCTTTCGATCACATTTCCATCAG AAGCCTCCGCTTGGTCCCCTGGTGAGACGATATCTCCGCTCCCTCTGTACGAGACATCATCAGCTGGGAAGATGGGCGGGTTCATCTCATCAGACAATTT GATGCCGCTCATGAGAAACGGACTGTACAAGAAAGGGATCGAGGTGTACTGTGCTCCGACCGCCGAAGCTGACGATGCGTGGTTCGATAGTTTGGCCCAC ATTGCCATGGAAGGCCACTGCTTCGTCCTGTCGGCTAACCAGTTTGTTCGACAGAAGGGTTGTTGTAGGCCGAAAGAACGGCATGATGTCGAGGAAGAGC CGTTGGATAACGCGGTCGTGTCTGCCGGAGGGAGTGTCATTATCTCGCCGTCGGGGAAGCTCTTAACTGGGGCTAAATACCATGGAGAATATGTTCTCGT GGCTGATCTTGAACTTGGAGAGATTGCGTCCTCAAAAGTGGAAATCGGTGGCGACTCGACCGGGTTCGGACCGAACGATGCTGGCTGGACAGTCGATGCA TCAGCGGCAGCTATTGCAGGGTGCTCTGTTCAGTTGGGGTGA
AA sequence Show only first row Show all	>Lus10011234 pacid=23147169 polypeptide=Lus10011234 locus=Lus10011234.g ID=Lus10011234.BGIv1.0 annot-version=v1.0 METAAEPSDEKKPATESQSVATRIDITEFCYSAISILQRELRLESISDVVPWLLDRLRLQTAIRDSGVPTCNSPASTSEIRVGEIFVPRPIPPPRLQRVR VTVAQASTVLFDTPATLEKAEKMISTAAAHSSRLIVFPEAFIGGYPQFLFNESSAGEEVKMNDDDLKKYRDSAIDYPGPEVEKVSQMAMKYGTNMVMGVV ERAGSKLFSTVIFFDWRGRRLGHHRKLSITFPSEASAWSPGETISPLPLYETSSAGKMGGFISSDNLMPLMRNGLYKKGIEVYCAPTAEADDAWFDSLAH IAMEGHCFVLSANQFVRQKGCCRPKERHDVEEEPLDNAVVSAGGSVIISPSGKLLTGAKYHGEYVLVADLELGEIASSKVEIGGDSTGFGPNDAGWTVDA SAAAIAGCSVQLG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10011234 [exp]	0	1
AT3G55550			Concanavalin A-like lectin pro...		Lus10040276 [exp]	2.2	0.8116
AT5G15780			Pollen Ole e 1 allergen and ex...		Lus10034365 [exp]	3.5	0.7886
AT3G55605			Mitochondrial glycoprotein fam...		Lus10001017 [exp]	8.6	0.8072
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10032033 [exp]	14.7	0.8033
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10023863 [exp]	14.8	0.7859
AT3G06200			P-loop containing nucleoside t...		Lus10021947 [exp]	15.7	0.7712
AT1G64450			Glycine-rich protein family (....		Lus10001818 [exp]	17.0	0.7489
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10007806 [exp]	21.9	0.7491
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10038396 [exp]	24.1	0.7611
AT5G49120			Protein of unknown function (D...		Lus10006499 [exp]	24.2	0.7662

Compare expression of checked genes

Lus10011234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.