Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28430 1015 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018448 [exp] 1480 / 0 AT3G28430 892 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G140800 [exp] 1151 / 0 AT3G28430 1019 / 0.0 unknown protein Potri.006G073600 [exp] 1098 / 0 AT3G28430 950 / 0.0 unknown protein Potri.006G204600 [exp] 380 / 2e-119 AT3G28430 285 / 3e-84 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09758 [flax] [poplar] FPL Uncharacterised conserved protein
Representative CDS sequence Show only first row Show all	>Lus10011235 pacid=23147110 polypeptide=Lus10011235 locus=Lus10011235.g ID=Lus10011235.BGIv1.0 annot-version=v1.0 ATGTGGTTCTCGTTCTGGAAATCCAGAGATCGATTCTCCTTGGATGAGCTCAGATATCTAACAGATCAGCTGCAGAATGTGAGAGTTGTAAATGAGGTCA ATAAGGATTTTATTGTTGAGGCATTGAGATCAATATCTGAGTTGATAACTTATGGAGACCAGCACGATTCAAGCTTTTTTGAATTTTTCATGGAGCAGCA AGTCATGGGAGAGTTTGTAAGAATAATAAAGCTTAGCAAATCTATGACCATTTCACTTCAGCTACTCCAGTCAATGAGTATTATGATCCAGAACCTTAGA ACAGAGCATGCTATATATTACATGTTCAGTAATGAATATATTAACTTCTTAATTACTTACACATATGACTTCCGGAATGAGGAGCTCCTGTCTTATTACA TGTCCTTTTTAAGAGCAATAAGTGGAAAGCTCAATAAGAATACGATTTCTCTTCTAGTCAAGACTCAGAATGAAGACATTGTTTCTTTTCCACTATATGT TGAGGCCATCAGGTTTGCTTTCCATCAAGAGAGTATGATCCGCACTGCAGTACGTGCCTTGACACTTAATGTCTACCATGTTGGAGATGGACCTGTGAAT AGATTTGTGAGCAACGCCCCGTATGACCGTTATTTTACAGAGCTGATATCATTTTTCCGCAAGCAATGTATTGATTTAAATGGAATGATCTCCGAAAGCC CACAAACAATAGATCCAGACAAGACCACTGCAATTCTTGCTGCAGTTGATGAAATTGAGGATAACCTCTACTATTTCAGCGATGTTATATCTGCTGGAAT TCCTGATGTTGGGAGGTTGATAACTGACAACATTCTGCAACTTTTGATACTTCCTTTGCTTCTTCCATCTTTGCGGTTAGATGCTGTTAATGTTCCGCCG ATTGCTCCTGTCACTTCTCTGTATCTCCTCTGCTGCATTTTACGCATTGTTAAAATTAAGGATTTGGCAAACGCCATTGCTGCTGCACTGTTCTGTCCAC TGGAGGCTTTTCTTCCTTATGCAGAAGCTAAAGTCAATGGTCATGTGGCTAGTGACAACGGTCATAAGAGCTTCCATCAGTTGGAAAATAATAACACAAC CACAGTTGATGAACTTACTGGAGTAGTTTCAAACTTATCAACTTCTTCACAAGTTTATCCTGAAGACCTTGTGACGCAATTTCATAGCAGTGAATCTTTG TATGCTCTCAGGGACGTGCTGCTATCTTATGTCGTAAGTGGAAATAGCCAACAGGTTCTGGGTTCATTGAATGTGCTAGCTACATTGTTGCAAACAAAAG TTATTGCAGAATTGGATGAAGCAATGCTCGATGCTCACGGCATTCTGCCCCAAAGAAAACAACACAAGAAACTCTTGTTGGCAACTTTGGTTGGTGAAGG GTTAGGGGAAGAGCAACTTTTTTCGCCAGAGAGCTGTACAAGAGATGGGATTGGTGGGTACCTACAAAGGCTCAAGGATGAATATGGGGTAGCGTGTTCC TCCTCAGAACTTGGGACGAGTTCTCGTGCACATAGATTCCAGGTTCTGGATTCGTTGGTTAGTCTTTTCTGCCGGCCAGGCATTCCTGCCGAGATATTAT GGGACGGGGGTTGGCTTTTGCGTCAACTACTTCCTTACAGCGGGGCAGAGTTCAACAGCCAGCACCTTAGATTACTGAAAGACTCGTACAGAGAGTGCAG CAATGCTCTTATAAAAGAGACAAGGGGCACTTGGCCGGATCTACTCATAATGGTATTAAGCGATGAGTGGAAAAAATGCAAGCGAGCAATCGAGGCTTCG TCTCCAAGGAAGGAGCCAAAATGCATGCTTTTGCCTCCCCAGAAGTCTTCTTCTGACGATGGTCGCAACGAATCATCCGTATCCTATGGAGAAAAAATGT GTGAGCTAGTGAAGGCGTTTGTGCTTCTTCATCAACTTCAAATTTTCTCCCTTGGCAGGGCTTCGCCCGAGCAGGCTCCGGTCCACCCTCCTTCCGATTT ACCCGGAGCTTCTCGTGCAAAGACTGCCGGCATCGATGGTTCCATTCCTAGACCAGGAACCGAGTTACGACTAGTCGATTCGGTACCATGTCGGATTGCG TTCGAGAGGGGTAAAGAACGTCATTTCTCCTTTCTAGCGTTATCTGTCGGCATTTCGGGGTGGATTCTCCTCTTGGAAGAGTTCCCTTTGAAGCAGCAGT ACGGTGTCGTTCGTGTCACTGCCCCGTTGGCCGGTTCGAGTCCGAGAATCGACGAGAAGCACACCAAATGGCTACATTTACGGATACGTCCATCCACTCT ACCCTCCGTCGATCCCGGAAGGCCTTCCCCCAACCTACCAAAACCCAAGGCGAAAACTTTGGTCGACGGCCGATGGACATTAGCATTTCGAGACGAGGAA TCCTGCAAGCACGCTTACTCCATGCTCGTCGAGGAGATAAACTTGCAAAGCAACGAGGTCGAGAGAAGGCTAAGACCGATGCTCAATCTCGACGAGCCCC CCGAAGACGACCCGTTCCCTCCTTCGGTCTCTTCCTCTAGTGTTTCATCGACCACGTTAAGCACAAGCACATAA
AA sequence Show only first row Show all	>Lus10011235 pacid=23147110 polypeptide=Lus10011235 locus=Lus10011235.g ID=Lus10011235.BGIv1.0 annot-version=v1.0 MWFSFWKSRDRFSLDELRYLTDQLQNVRVVNEVNKDFIVEALRSISELITYGDQHDSSFFEFFMEQQVMGEFVRIIKLSKSMTISLQLLQSMSIMIQNLR TEHAIYYMFSNEYINFLITYTYDFRNEELLSYYMSFLRAISGKLNKNTISLLVKTQNEDIVSFPLYVEAIRFAFHQESMIRTAVRALTLNVYHVGDGPVN RFVSNAPYDRYFTELISFFRKQCIDLNGMISESPQTIDPDKTTAILAAVDEIEDNLYYFSDVISAGIPDVGRLITDNILQLLILPLLLPSLRLDAVNVPP IAPVTSLYLLCCILRIVKIKDLANAIAAALFCPLEAFLPYAEAKVNGHVASDNGHKSFHQLENNNTTTVDELTGVVSNLSTSSQVYPEDLVTQFHSSESL YALRDVLLSYVVSGNSQQVLGSLNVLATLLQTKVIAELDEAMLDAHGILPQRKQHKKLLLATLVGEGLGEEQLFSPESCTRDGIGGYLQRLKDEYGVACS SSELGTSSRAHRFQVLDSLVSLFCRPGIPAEILWDGGWLLRQLLPYSGAEFNSQHLRLLKDSYRECSNALIKETRGTWPDLLIMVLSDEWKKCKRAIEAS SPRKEPKCMLLPPQKSSSDDGRNESSVSYGEKMCELVKAFVLLHQLQIFSLGRASPEQAPVHPPSDLPGASRAKTAGIDGSIPRPGTELRLVDSVPCRIA FERGKERHFSFLALSVGISGWILLLEEFPLKQQYGVVRVTAPLAGSSPRIDEKHTKWLHLRIRPSTLPSVDPGRPSPNLPKPKAKTLVDGRWTLAFRDEE SCKHAYSMLVEEINLQSNEVERRLRPMLNLDEPPEDDPFPPSVSSSSVSSTTLSTST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28430			unknown protein		Lus10011235 [exp]	0	1
AT5G22780			Adaptor protein complex AP-2, ...		Lus10043363 [exp]	1.4	0.9074
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10029309 [exp]	4.7	0.8973
AT1G59650		CW14	Protein of unknown function (D...		Lus10039463 [exp]	5.3	0.8608
AT5G19400		SMG7	Telomerase activating protein ...		Lus10036041 [exp]	6.5	0.8896
AT2G01480			O-fucosyltransferase family pr...		Lus10034606 [exp]	9.5	0.8537
AT1G31440			SH3 domain-containing protein ...		Lus10033292 [exp]	13.8	0.7864
AT1G05960			ARM repeat superfamily protein...		Lus10001161 [exp]	14.7	0.8439
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10009083 [exp]	16.1	0.8805
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10034941 [exp]	18.6	0.8602
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10013433 [exp]	20.2	0.8797

Compare expression of checked genes

Lus10011235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.