Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21570 217 / 6e-72 Protein of unknown function (DUF300) (.1) AT1G11200 205 / 2e-67 Protein of unknown function (DUF300) (.1) AT1G77220 54 / 4e-09 Protein of unknown function (DUF300) (.1) AT4G38360 49 / 1e-07 LAZ1 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) AT5G26740 49 / 2e-07 Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2), Protein of unknown function (DUF300) (.3) AT3G05940 48 / 3e-07 Protein of unknown function (DUF300) (.1) AT1G23070 45 / 3e-06 Protein of unknown function (DUF300) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018447 [exp] 264 / 2e-90 AT4G21570 464 / 1e-166 Protein of unknown function (DUF300) (.1) Lus10028621 [exp] 51 / 3e-08 AT1G77220 316 / 2e-103 Protein of unknown function (DUF300) (.1) Lus10018920 [exp] 51 / 4e-08 AT1G77220 316 / 5e-104 Protein of unknown function (DUF300) (.1) Lus10001058 [exp] 50 / 9e-08 AT3G05940 675 / 0.0 Protein of unknown function (DUF300) (.1) Lus10001426 [exp] 50 / 9e-08 AT3G05940 674 / 0.0 Protein of unknown function (DUF300) (.1) Lus10035832 [exp] 48 / 3e-07 AT1G23070 205 / 6e-63 Protein of unknown function (DUF300) (.1) Lus10022625 [exp] 42 / 3e-05 AT4G38360 296 / 7e-102 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Lus10003321 [exp] 42 / 4e-05 AT4G38360 321 / 2e-106 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G035900 [exp] 214 / 4e-71 AT1G11200 436 / 1e-155 Protein of unknown function (DUF300) (.1) Potri.011G044200 [exp] 209 / 3e-69 AT1G11200 395 / 1e-139 Protein of unknown function (DUF300) (.1) Potri.001G405700 [exp] 192 / 3e-62 AT4G21570 421 / 2e-149 Protein of unknown function (DUF300) (.1) Potri.005G188200 [exp] 58 / 9e-11 AT1G77220 756 / 0.0 Protein of unknown function (DUF300) (.1) Potri.002G071400 [exp] 56 / 4e-10 AT1G77220 753 / 0.0 Protein of unknown function (DUF300) (.1) Potri.004G204600 [exp] 55 / 1e-09 AT4G38360 713 / 0.0 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Potri.009G165600 [exp] 52 / 2e-08 AT4G38360 717 / 0.0 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Potri.018G062600 [exp] 48 / 3e-07 AT1G23070 522 / 0.0 Protein of unknown function (DUF300) (.1) Potri.005G000600 [exp] 48 / 4e-07 AT3G05940 622 / 0.0 Protein of unknown function (DUF300) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03619 [flax] [poplar] Solute_trans_a Organic solute transporter Ostalpha
Representative CDS sequence Show only first row Show all	>Lus10011236 pacid=23147131 polypeptide=Lus10011236 locus=Lus10011236.g ID=Lus10011236.BGIv1.0 annot-version=v1.0 ATGGATTTCTCGAACTTCAGTCGAGGTCAGATCACCATTATGGGAACGGGATTGAGTGTGATGCTGACGATGCATTTCACGGTTCAGCTAGTATCACAGC ATCTATTCTACTGGAAGAACCCCAAGGAGCAGAAGGGCATCATCATTATCCTCCTCATGGCGCCTATATACGCTATCGTGTCGTTCGTAGGGTTGTTGGA TATCCGTGGGAGTGAAGCTTTCTTCATGTTCTTGGAATCAATCAAGGAGTGTTACGAAGCTTTGGTGATCGCCAAGTTCTTGGCTTTGATGTACAGTTAC CTGAACATATCCATGAGCAAAAACATTGTCCCGGATGAGATTAAAGGAAGAGAGATTCACCATTCCTTCCCAATGACACTTTTCCAGGTATGA
AA sequence Show only first row Show all	>Lus10011236 pacid=23147131 polypeptide=Lus10011236 locus=Lus10011236.g ID=Lus10011236.BGIv1.0 annot-version=v1.0 MDFSNFSRGQITIMGTGLSVMLTMHFTVQLVSQHLFYWKNPKEQKGIIIILLMAPIYAIVSFVGLLDIRGSEAFFMFLESIKECYEALVIAKFLALMYSY LNISMSKNIVPDEIKGREIHHSFPMTLFQV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21570			Protein of unknown function (D...		Lus10011236 [exp]	0	1
AT2G39960			Microsomal signal peptidase 25...		Lus10009885 [exp]	5.5	0.6828
AT3G51370			Protein phosphatase 2C family ...		Lus10028408 [exp]	17.2	0.6841
AT1G03310		ATISA2, ISA2, D...	BRANCHING ENZYME 2, ARABIDOPSI...		Lus10027999 [exp]	24.0	0.6466
AT3G60380			unknown protein		Lus10042896 [exp]	35.3	0.6239
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10001198 [exp]	59.9	0.6238
AT5G32440			Ubiquitin system component Cue...		Lus10027699 [exp]	62.0	0.5919
AT3G06240			F-box family protein (.1)		Lus10027824 [exp]	62.1	0.6216
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Lus10039119 [exp]	76.5	0.5987
AT3G05880		RCI2A	RARE-COLD-INDUCIBLE 2A, Low te...		Lus10019890 [exp]	96.3	0.5968
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Lus10004701 [exp]	97.0	0.5626

Compare expression of checked genes

Lus10011236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.