Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28470 900 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT3G13750 780 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT2G32810 776 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT4G36360 726 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT1G45130 711 / 0 BGAL5 beta-galactosidase 5 (.1) AT4G26140 693 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT3G52840 688 / 0 BGAL2 beta-galactosidase 2 (.1) AT5G56870 687 / 0 BGAL4 beta-galactosidase 4 (.1) AT5G20710 683 / 0 BGAL7 beta-galactosidase 7 (.1) AT5G63810 674 / 0 BGAL10 beta-galactosidase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006733 [exp] 1080 / 0 AT2G28470 939 / 0.0 beta-galactosidase 8 (.1.2) Lus10015625 [exp] 778 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 778 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 773 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000271 [exp] 767 / 0 AT2G28470 1046 / 0.0 beta-galactosidase 8 (.1.2) Lus10016655 [exp] 765 / 0 AT2G32810 1290 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Lus10003343 [exp] 736 / 0 AT5G63810 1054 / 0.0 beta-galactosidase 10 (.1) Lus10041798 [exp] 736 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10025980 [exp] 728 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G044300 [exp] 1171 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.009G012400 [exp] 897 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.003G038500 [exp] 782 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.006G144500 [exp] 778 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.017G057900 [exp] 769 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Potri.001G200400 [exp] 764 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.005G232600 [exp] 748 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G099800 [exp] 743 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.007G018100 [exp] 732 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.001G025800 [exp] 702 / 0 AT5G20710 1097 / 0.0 beta-galactosidase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10011237 pacid=23147163 polypeptide=Lus10011237 locus=Lus10011237.g ID=Lus10011237.BGIv1.0 annot-version=v1.0 ATGAATCGTTTCGGAATTGTGGTGTTGTGGGTTCTGGTTTGTGGGTGCAGCTGGTTCGAGGAAGGGCTGTGTTCTACAGTGAGTTACGATCATAGAGCTA TTGTCATTGATGGGAAGAGAAGGGTGTTGCTATCTGGGTCAGTCCACTATCCTCGGGCTACTCCTGAGATGTGGCCAGAGATTATCAGAAGGTCAAAGGA AGGAGGGTTGGACGTGATCGAAACCTATGTGTTCTGGAACTATCATGAGCCTGTTAGAGGACAGTACTACTTTGAAGATAGATTTGACTTGGTGAGGTTT GTCAAGGCAGTTCAGGAAGCTGGTCTTCTGGTCCATTTGCGGATCGGCCCATATGCTTGTGCTGAATGGAACTATGGAGGGTTCCCAATGTGGCTACATT TCCTTCCCGGTATCCAGTTCCGAACTGATAATGCCATATTTAAGAATGAAATGGAGCGGTTTCTCGCGAAAATTGTTAATCTCATGAAGGAGGAACAACT CTTTGCATCACAAGGTGGTCCGATCATTCTTGCCCAGGTCAGCCAAGCAGTTACAATTAGCATATTCTCCGTTGCTGGCTTTGTAAATCAGTATATAACT AGCGTTGTGGTGTGGCAGGTTGAGAACGAATACGGAAATGTCCAGGCATCGTACGGGGAAGCTGGGGATTTATATGTTCAATGGGCTGCAAAAACTGCCG TCAGTTTGAACACAACTGTTCCATGGGTGATGTGTGCACAACAAGATGCTCCTGATCCAGTAATAAACACATGCAATGGGTTCTACTGTGATGGTTTCAC TCCAAATTCTCCTTCAAAGCCTAAAATGTGGACAGAGAACTATAGTGGATGGTTTCTGTCATTTGGTTATCCCATTCCTTATAGACCAGTTGAGGACTTG GCTTTCTCTGTTGCTCGGTTCTTCGAATATGGTGGAACATTCCAAAACTACTACATGGCATCTGCATTCTCGATACTCGCGATCGACACCTTGCTTGAGC TAGAACAACTATTTACTACTTGGATTCTTCTTCTTCTCAACTATGATATGCATTTCCAGTATTTTGGTGGTACAAACTTTGGTCGAACTGCTGGAGGTCC TCTGATCGCAACAAGCTATGACTATGATGCACCACTTGATGAATATGGTTACATCAGACAGCCAAAGTGGGGACATCTACGTGACCTGCACAAGGTCATA AAGCTCTGCGAGGAACATCTTATAAGCTCAGACCCAGTGCATCAGAGTTTGGGCCACAACTTAGAGGCTCATATTTACTACAAATCTCCCAACACCAGCT GTGCAGCCTTTCTCGCGAATTTCGACAGTAAATCTGATGCCAAGGTTAAGTTCGAAGGGAATGAGTACTTCCTTCCTGCTTGGTCCGTGAGCATCCTTCC GGATTGTAAGAACGTTGTCTTCAACACAGCAAAGGTTGTTTCACAAAGGCATCCTGTTGGCAACTCTTTCACTAGATCAACAACAACTCCAAATGAGGTT TCACTAGCGACATCTGGATCAGCCTGGAGCTGGTACCAAGAACAAGTTGGAATCTGGGGCAACGATTCGTTTACAAAGTCTGGTTTACTGGAGCAGATCA ATACCACCAAAGACAAAAGTCTTGGATACGGTAACCATGATGACGAAAAATTCTCAATCACTCAGAAGATCACACTAGCTGAAGGGAAGAACACCCTGGA TATTCTGAGTATGATGATTGGTTTGCAGAACTATGGACCGATGTTCGACGTACAAGGAGCTGGGATCGACTCTGTTGTTCTTGCCGAGTTCAAGAACGGC AACCGTGATATTTCTTCTGGGAAATGGACTTACCAGGTGGGACTTAAAGGAGAAGAGATTGGTCTGCATGAAGTGAGATTGGCAAACAGTTCATATTGGG ATCGTGGTAGCTCTCTCCCTGTTGCCAAGAGTTTGATTTGGTACAAGACCACGTTTCTTGCACCACAAGGAAAAGGCCCTTTGGTTCTAAACTTAGGCAG CATGGGGAAAGGCCAGGCATGGGTGAACGGAAAAGGCATTGGCAGATATTGGCCTGCCTATCTCTCCCCACCAAATGGCTGCATCGAGAACTGTGACTAC AGAGGAAGTCATGATTCTTCCACGTGTCAAAGGAACTGTGGCCAACCTACTCAAACATTGTACCATGTACCGCGAGCCTGGGTTCGATCCGGGGAAAACT TGTTGGTACTACACGAAGAGCTGGGTGGCGACCCGTCGAAGATCTCGGTTTTGACTCAAACCGATCAGGAGACTGTGTGTTCTATGATTTCAGAAGACGA TCCTCCACCGCCCGATACTTGGAAACCGAATGCGGAGCTCATTGCGTCTCGGAGTGCTGAAGTTCGGCTTTCATGTGAGGAAGGGAGCCACATTTCCACG ATCAACTTCGCTAGCATCGGCGATCCTAAGGGGCACTGCGGTTCGTTCGCTCGTGGGGATTGTCATGTCGATGTGTTGCCCTTCGTACGTAAGCTCCCAA TAACAACAGAATCTCACTCTTCCCTCCGCCGCAGATTCATTGTGATCTCAGGAAGAACGGGGGATTTTAGTTTGTGTGTATCTTTATCCTCCTCCGTTGC TCCTGATTCACGATTTTACTCATCGATTCAGGGGTTTGCGAAACAGCGGAGGAGGACGCGGCGATTTGAGAGACAGGGGATACAGGGGAGGTGA
AA sequence Show only first row Show all	>Lus10011237 pacid=23147163 polypeptide=Lus10011237 locus=Lus10011237.g ID=Lus10011237.BGIv1.0 annot-version=v1.0 MNRFGIVVLWVLVCGCSWFEEGLCSTVSYDHRAIVIDGKRRVLLSGSVHYPRATPEMWPEIIRRSKEGGLDVIETYVFWNYHEPVRGQYYFEDRFDLVRF VKAVQEAGLLVHLRIGPYACAEWNYGGFPMWLHFLPGIQFRTDNAIFKNEMERFLAKIVNLMKEEQLFASQGGPIILAQVSQAVTISIFSVAGFVNQYIT SVVVWQVENEYGNVQASYGEAGDLYVQWAAKTAVSLNTTVPWVMCAQQDAPDPVINTCNGFYCDGFTPNSPSKPKMWTENYSGWFLSFGYPIPYRPVEDL AFSVARFFEYGGTFQNYYMASAFSILAIDTLLELEQLFTTWILLLLNYDMHFQYFGGTNFGRTAGGPLIATSYDYDAPLDEYGYIRQPKWGHLRDLHKVI KLCEEHLISSDPVHQSLGHNLEAHIYYKSPNTSCAAFLANFDSKSDAKVKFEGNEYFLPAWSVSILPDCKNVVFNTAKVVSQRHPVGNSFTRSTTTPNEV SLATSGSAWSWYQEQVGIWGNDSFTKSGLLEQINTTKDKSLGYGNHDDEKFSITQKITLAEGKNTLDILSMMIGLQNYGPMFDVQGAGIDSVVLAEFKNG NRDISSGKWTYQVGLKGEEIGLHEVRLANSSYWDRGSSLPVAKSLIWYKTTFLAPQGKGPLVLNLGSMGKGQAWVNGKGIGRYWPAYLSPPNGCIENCDY RGSHDSSTCQRNCGQPTQTLYHVPRAWVRSGENLLVLHEELGGDPSKISVLTQTDQETVCSMISEDDPPPPDTWKPNAELIASRSAEVRLSCEEGSHIST INFASIGDPKGHCGSFARGDCHVDVLPFVRKLPITTESHSSLRRRFIVISGRTGDFSLCVSLSSSVAPDSRFYSSIQGFAKQRRRTRRFERQGIQGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10011237 [exp]	0	1
AT4G21192			Cytochrome c oxidase biogenesi...		Lus10019246 [exp]	6.1	0.8140
AT1G78790			unknown protein		Lus10042781 [exp]	11.4	0.7336
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10009404 [exp]	13.0	0.8008
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10041796 [exp]	14.1	0.7876
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013076 [exp]	14.4	0.7632
AT2G02570			nucleic acid binding;RNA bindi...		Lus10007436 [exp]	15.1	0.7932
AT4G14965		ATMAPR4	membrane-associated progestero...		Lus10018026 [exp]	16.4	0.7860
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10027674 [exp]	20.2	0.7771
AT5G48840		ATPTS, PANC	ARABIDOPSIS THALIANA PANTOTHEN...		Lus10025932 [exp]	23.9	0.7642
AT3G13000			Protein of unknown function, D...		Lus10037293 [exp]	25.7	0.7636

Compare expression of checked genes

Lus10011237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.