Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54310 258 / 1e-80 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G17660 204 / 3e-63 AGD15 ARF-GAP domain 15 (.1) AT4G05330 102 / 4e-24 AGD13 ARF-GAP domain 13 (.1) AT4G21160 102 / 9e-24 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT5G13300 101 / 1e-22 AGD3, VAN3, SFC ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) AT3G07940 97 / 9e-22 Calcium-dependent ARF-type GTPase activating protein family (.1) AT3G53710 96 / 2e-21 AGD6 ARF-GAP domain 6 (.1.2) AT5G61980 97 / 4e-21 AGD1 ARF-GAP domain 1 (.1) AT5G46750 95 / 4e-21 AGD9, AGD8 ARF-GAP domain 9 (.1) AT4G17890 94 / 1e-20 UBP20, AGD8 ARF-GAP domain 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018445 [exp] 761 / 0 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1) Lus10038582 [exp] 245 / 7e-76 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1) Lus10027249 [exp] 200 / 3e-61 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10037882 [exp] 131 / 2e-33 AT5G54310 344 / 4e-114 NEVERSHED, ARF-GAP domain 5 (.1) Lus10039538 [exp] 101 / 1e-22 AT3G07940 490 / 4e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10024165 [exp] 100 / 1e-22 AT3G07940 491 / 1e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10001799 [exp] 100 / 4e-22 AT5G13300 1201 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10000903 [exp] 97 / 1e-21 AT4G17890 469 / 3e-165 ARF-GAP domain 8 (.1.2) Lus10002572 [exp] 98 / 2e-21 AT5G13300 1149 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G044100 [exp] 349 / 3e-116 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.004G035800 [exp] 319 / 3e-104 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G127000 [exp] 266 / 1e-83 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G406300 [exp] 265 / 7e-83 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.012G036900 [exp] 220 / 2e-69 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.001G372000 [exp] 104 / 1e-24 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.011G098500 [exp] 104 / 1e-24 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.003G198301 [exp] 104 / 4e-24 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.T125706 [exp] 104 / 4e-24 AT3G07940 503 / 8e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.001G066800 [exp] 102 / 4e-23 AT5G13300 1192 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10011238 pacid=23147126 polypeptide=Lus10011238 locus=Lus10011238.g ID=Lus10011238.BGIv1.0 annot-version=v1.0 ATGAATCATAAAGCCAACGTGTCCAGGGAGCTCAACGCCAGGCACAGTAAGATATTGGAAGGGCTGCTTAAGTTAGCTGAGAACAGAGAATGTGCCGATT GTAAAAGCAAAGGTCCGAGATGGGCTAGTGTGAACCTGGGAATCTTCATATGCATGCAATGCTCAGGGATCCATAGAAGCCTTGGAGTACACATTTCTCA GGTAAGGTCTGCAACATTAGACACATGGCTGCCAGACCAGATCTCTTCCATCCAATCTATGGGAAATGAGAGATCAAACAGTTACTGGGAATCAGAGCTG CCTCCTAATTATGACAGAGTTGGGATTGAGAACTTCATCCGGGCCAAGTATGTCGACAGAAGATGGGTCCCAAGGGACGGGAAACCAAGATCGATTCCTG GGGTTCGAAGTAGTGAGCTGAGTCGTCAACAGGTAGCTGCTAGAAGCGATTATGATTGGAAGATAGCTCCTCCCCCGGCTGCCAATGGAAGTGTTCATGT TCCCAAGTGTTCGAGTCCTGAGCCGGTTAAGGTTGCTCCTAAGAGTAGTACTACTCTGGAGCCGGTTAAAGTTGTCCAGCAGGTAAATGAAGTTTCCTCC ATTGGCAATCTTAATGGACATATTGCTGCTCATGATGCAAAACCACCACCAGCACAAAAAACACCAGTTATAAACACTGAGCCAGCAGTGTCAAGGCCAG AATTGCCTAAGCTGGAAGCAACTGCAGCTTTACCGAAAAAAGTGGACTATGCCACTGAGCTTTTCAATTTACTCTGCATGAATGATGATTCCTCTACCGT AAATGACTTGAACTCGAACTCGAACACTTGGAGCACCGGAACCAACCCTTATCAGCCCGTGGCTCAACCATCTCAACTAGAGCAACACACAAAGGAAAAG GCCGACATGGTCACTTCACTTCCCATTCCTCAACAGCAAAAACAGCCATTCCAAATGCCTTACTCAAATGGAGGGTACCAAGCTTTACTAGGCAATGGAC ATTCAATCAGTTCAAATGAAGTTCAGTTTTCTCAACAGCATTGGCAAGGAACTCCTGGCCATCAGGTTCCTGCAAGCATGCCAATTCCTGCTGCTGATCA TCCCGGAAAATACATTCATCAGGTTGGATACAACCCACAGATGTACCCAAATGGGAACTCCTTCACTCCCCCAATGTCAAGTGTATATGGGCAAGGACTG ATCGGCCAGATGAATGGTGTGCCGCAAGCAATGCATCATCATCAAGCTCAAACTCAGAATGCATATCCAATGGTGGTTCCAGTGACTGTAGTAAATCAGC AGCAAGCAGGTTATTATTATGATCTGTCCTCGTTGACACCAGCAGTGTATAAGAAATGGTGA
AA sequence Show only first row Show all	>Lus10011238 pacid=23147126 polypeptide=Lus10011238 locus=Lus10011238.g ID=Lus10011238.BGIv1.0 annot-version=v1.0 MNHKANVSRELNARHSKILEGLLKLAENRECADCKSKGPRWASVNLGIFICMQCSGIHRSLGVHISQVRSATLDTWLPDQISSIQSMGNERSNSYWESEL PPNYDRVGIENFIRAKYVDRRWVPRDGKPRSIPGVRSSELSRQQVAARSDYDWKIAPPPAANGSVHVPKCSSPEPVKVAPKSSTTLEPVKVVQQVNEVSS IGNLNGHIAAHDAKPPPAQKTPVINTEPAVSRPELPKLEATAALPKKVDYATELFNLLCMNDDSSTVNDLNSNSNTWSTGTNPYQPVAQPSQLEQHTKEK ADMVTSLPIPQQQKQPFQMPYSNGGYQALLGNGHSISSNEVQFSQQHWQGTPGHQVPASMPIPAADHPGKYIHQVGYNPQMYPNGNSFTPPMSSVYGQGL IGQMNGVPQAMHHHQAQTQNAYPMVVPVTVVNQQQAGYYYDLSSLTPAVYKKW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10011238 [exp]	0	1
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10033316 [exp]	2.4	0.8690
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10017527 [exp]	3.5	0.8782
AT4G36945			PLC-like phosphodiesterases su...		Lus10000092 [exp]	4.0	0.8929
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10043233 [exp]	5.0	0.8573
AT5G53330			Ubiquitin-associated/translati...		Lus10014944 [exp]	11.5	0.8532
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Lus10016363 [exp]	11.9	0.7989
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10013571 [exp]	13.4	0.8503
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	15.6	0.8600
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033818 [exp]	16.9	0.8516
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10011113 [exp]	19.0	0.8352

Compare expression of checked genes

Lus10011238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.