Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61260 210 / 3e-65 Protein of unknown function (DUF761) (.1) AT1G11220 155 / 1e-44 Protein of unknown function (DUF761) (.1) AT1G11210 123 / 2e-32 Protein of unknown function (DUF761) (.1) AT5G54300 117 / 7e-30 Protein of unknown function (DUF761) (.1) AT1G11230 81 / 7e-17 Protein of unknown function (DUF761) (.1), Protein of unknown function (DUF761) (.2) AT4G04990 49 / 2e-06 Protein of unknown function (DUF761) (.1) AT5G56980 41 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018444 [exp] 335 / 2e-112 AT5G54300 212 / 6e-65 Protein of unknown function (DUF761) (.1) Lus10020090 [exp] 170 / 2e-49 AT1G61260 101 / 6e-24 Protein of unknown function (DUF761) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G044000 [exp] 270 / 3e-88 AT1G61260 227 / 7e-72 Protein of unknown function (DUF761) (.1) Potri.004G035700 [exp] 198 / 1e-60 AT1G61260 135 / 4e-37 Protein of unknown function (DUF761) (.1) Potri.001G406600 [exp] 198 / 1e-60 AT1G61260 192 / 1e-58 Protein of unknown function (DUF761) (.1) Potri.011G126900 [exp] 181 / 7e-54 AT1G61260 182 / 1e-54 Protein of unknown function (DUF761) (.1) Potri.012G037001 [exp] 73 / 1e-14 AT5G54300 70 / 9e-14 Protein of unknown function (DUF761) (.1) Potri.015G028700 [exp] 67 / 4e-12 AT1G61260 68 / 2e-12 Protein of unknown function (DUF761) (.1) Potri.001G008160 [exp] 39 / 0.0003 AT2G26110 45 / 7e-07 Protein of unknown function (DUF761) (.1) Potri.001G008080 [exp] 39 / 0.0005 AT2G26110 44 / 2e-06 Protein of unknown function (DUF761) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [flax] [poplar] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Lus10011239 pacid=23147174 polypeptide=Lus10011239 locus=Lus10011239.g ID=Lus10011239.BGIv1.0 annot-version=v1.0 ATGGCGTCCTTCACCTTCTCCCTCCGTATACTGCTGATCTCCACCGGCGTCCTGTCCGGAGCTCTGCTCCTCAAAGCCTCTGTTCCATTGGTGCGAGATT TCTCTGTTTATCAAGCTCCCATCCTCTGGAGCTCGATCTCCTCCTGGCTCAGGCCACCGTATCTCTACGTCATTATCAACTGCATAATCATCACCATCGC CGCCTCCTCGCGGTTCCACAACGGCGGAGGTGAGCAGCAGCAGGAAGAGGAGCACCGGCCGAAGGTGGAGGCGGTAGTGGTGGCGCCGCTGCCGCCACCT CCGGCGGTGGATCGTTTTGATTTCGACGATCAGGTGACGGTTTTTTCGTCTGCTCCGGTTATTGTCGAATCTCGTGATTTCGGTGGAGTTGAGGTGGAGG ATGCGGCGGCGGATTCAGTATTTGTGGATAAGGCTGTGACGGTGAGTAGCATCAGCGGCGGAGGCGGCGGTGGTGGCTCTTCTGGTGAGGTTTTCGAACG GGATGAAGATGAAGAGGCGTTCGTGATATCGAGATCTGCCTGGATTCCGCCGACGAAGAAGAGGATTGAATCGTCGGAGAATCTGATGAAGGAGCTGCTC TCTCCAGCTGAGAAACCTCTCGTTTCTGCTCGATTCGGTCACCGGAAACCGGTCAGAGTCAGCCCCGAAGGTGGGCGGAAGCTGAAGGTGTCGTCGAGGC CGAAGCGACACGACACGCTGGAGAACACGTGGAAGATGATAACGGAAGGCCGTTCGATGCCGTTAAATCGCCACCTCAAGAAATCCGACACGTGGGAGAC TAACCACAGCCGTCAGATCGACGTCAACGAATCATCAATCCTACTCGGCGCCAGTCCTCTGCCACCGGCGGTGAAGAAGTCGGAGACTTTTAAGGACAGG ACCAACTTCCAGCAGCTGCCGCCGGGGGGTCCGGCGGCGGCGGGGCGGGAGCAGGAGCCGTGGCTGGGCGAGGTGGGTCAGGACGAGCTGAACCGGCGAG TGGAGGCGTTTATCAATAAGTTCAACGAGGAGATGAGGATGCAGAGGCAGGAGTCGATAAACCGGTACAAGGAGATGGTTAGCCGTTGA
AA sequence Show only first row Show all	>Lus10011239 pacid=23147174 polypeptide=Lus10011239 locus=Lus10011239.g ID=Lus10011239.BGIv1.0 annot-version=v1.0 MASFTFSLRILLISTGVLSGALLLKASVPLVRDFSVYQAPILWSSISSWLRPPYLYVIINCIIITIAASSRFHNGGGEQQQEEEHRPKVEAVVVAPLPPP PAVDRFDFDDQVTVFSSAPVIVESRDFGGVEVEDAAADSVFVDKAVTVSSISGGGGGGGSSGEVFERDEDEEAFVISRSAWIPPTKKRIESSENLMKELL SPAEKPLVSARFGHRKPVRVSPEGGRKLKVSSRPKRHDTLENTWKMITEGRSMPLNRHLKKSDTWETNHSRQIDVNESSILLGASPLPPAVKKSETFKDR TNFQQLPPGGPAAAGREQEPWLGEVGQDELNRRVEAFINKFNEEMRMQRQESINRYKEMVSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11220			Protein of unknown function (D...		Lus10011239 [exp]	0	1
AT5G54300			Protein of unknown function (D...		Lus10018444 [exp]	3.2	0.7475
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10035482 [exp]	10.7	0.7961
AT1G53210			sodium/calcium exchanger famil...		Lus10042848 [exp]	12.6	0.7325
AT2G05810			ARM repeat superfamily protein...		Lus10029996 [exp]	35.4	0.6754
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Lus10007168 [exp]	41.6	0.6978
AT3G54920		PMR6	powdery mildew resistant 6, Pe...		Lus10038679 [exp]	47.9	0.6768
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10024555 [exp]	52.8	0.7039
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10041013 [exp]	61.8	0.6805
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10019285 [exp]	68.0	0.7142
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10007319 [exp]	69.6	0.6512

Compare expression of checked genes

Lus10011239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.