Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46470 70 / 2e-12 RPS6 RESISTANT TO P. SYRINGAE 6, disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46510 62 / 3e-10 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46520 62 / 4e-10 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16960 62 / 4e-10 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44670 62 / 5e-10 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G44510 62 / 7e-10 TAO1 target of AVRB operation1 (.1) AT5G46260 60 / 2e-09 disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G04220 56 / 4e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19050 55 / 7e-08 NB-ARC domain-containing disease resistance protein (.1) AT1G69550 55 / 8e-08 disease resistance protein (TIR-NBS-LRR class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038482 [exp] 268 / 5e-80 AT1G69550 386 / 3e-113 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10023487 [exp] 197 / 5e-55 AT5G36930 284 / 4e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10040368 [exp] 189 / 1e-52 AT1G69550 219 / 1e-58 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10037406 [exp] 178 / 1e-48 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020533 [exp] 170 / 8e-46 AT1G27170 405 / 1e-122 transmembrane receptors;ATP binding (.1.2) Lus10023272 [exp] 169 / 2e-45 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 167 / 1e-44 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020238 [exp] 163 / 1e-43 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10020237 [exp] 157 / 2e-42 AT1G69550 99 / 3e-21 disease resistance protein (TIR-NBS-LRR class) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G031899 [exp] 62 / 5e-10 AT1G69550 469 / 6e-141 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.012G053200 [exp] 59 / 5e-09 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.019G070393 [exp] 58 / 8e-09 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.005G030700 [exp] 57 / 1e-08 AT1G69550 602 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.005G030318 [exp] 57 / 2e-08 AT1G69550 673 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.011G005900 [exp] 57 / 2e-08 AT3G14470 374 / 2e-111 NB-ARC domain-containing disease resistance protein (.1) Potri.005G030365 [exp] 56 / 2e-08 AT1G69550 92 / 2e-20 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.017G015000 [exp] 56 / 4e-08 AT3G14460 125 / 5e-30 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.017G121500 [exp] 56 / 5e-08 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.015G043600 [exp] 55 / 1e-07 AT1G27170 1195 / 0.0 transmembrane receptors;ATP binding (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011242 pacid=23147171 polypeptide=Lus10011242 locus=Lus10011242.g ID=Lus10011242.BGIv1.0 annot-version=v1.0 ATGGTGATCCATACTCTTTGTCTTAAGTCATGGCTAAAAATCAACGAGAGTGGTGATTTCTGGATGCATGATCATTATAAAAGCCTTGGCATTGATATTG CTCGCGAGGAAACCCATCCCTGGAACCGCAGCAGGGTATGGTCCAACAAGGATGCGCTGGACATGTTAAGAGATAAAAAGATGCTTCCAAATCTTGCCAA TCTAAATATTCTGATGAAACTAACTCTGGATTCGTTTGGGGAGCGTGAGATTCCTGGTCTGGGGTATCTGAGAAAGCTGCAAACTTTGAGGATTCTTGAG GCTCGGAAGCTAATTAATCTTGATGGCCTTGAACATCTCCAGCTTCTGAAGAAATTTTATTTGTCCTACTGTGATGTTCTGGAGACACTACCTAGTCTAT CTAATTCGACCAAGTTAGACTATGTAAGAATCAACTCATGTTGCCTCCTCTCTGACATTGGAAGCCTGGGGGAGTCTTTGTCCCATATTGACATGAGCAG ATGTCCCATCGTAGCAGCCCTTCTGGCCTCTCCCTTGTTGGAAGCACCAGACCGAGCAGGGTCGACACATACCGAGACAATGCAGGCTCCTTCTGTGCCG CCTCTGTCCAAGTTAGCAAATCTGAGAACGTTGTCCCTGGAATGTACCGAGATTCAGCATCTATTGTCACCAGAACTAGTCCTTGATTTCTCTGCTCACC GTAGTATGGAGAAATTATCTATAATCAGGTGCAAACAGCTGATTCAGATCAGCGGGATTGAGAGCCTGCAGTCACTGCGTGAATTGCGCCTGCCTTGCTG CGTGTCGATTAGGAAGTTACCGAATCTTTCCAGCCTGAAAGAGCTACGGCTTTTAGATATCGATGTATGCACTAATTTGACCGAGGTAACGGGGCTTGAG AAGTTGGAGTCCTTTACGAGCCTTTATATGCGGGACTGTATTCTGGAGTTGCCAAGTTTGCCCAAGAACATGTCCTCCTTGAACATAATCTATTGCCGCC AGTTGACTGACGTGATGGGCATTGAGAAATTCAAGTCATTAGAGTTTCTATACATGGAAAGTTGCACAAGGATTACAAAGTTGCCGGATCTATCTCGGTT TAAACGTTTGCACACGCTCAATGTTAGAGGTTGCATACACTTGACTGAACTCATCGGAATGGAGAATCTCGTGTCGTTAAATGTGCTGATGATGGACGGC TTGCTGGCAGACAAGTATGAACATTTGCTGCCACATTGTATGAGTAGGATGCCCACTTACCGCCATTTGCTCTAA
AA sequence Show only first row Show all	>Lus10011242 pacid=23147171 polypeptide=Lus10011242 locus=Lus10011242.g ID=Lus10011242.BGIv1.0 annot-version=v1.0 MVIHTLCLKSWLKINESGDFWMHDHYKSLGIDIAREETHPWNRSRVWSNKDALDMLRDKKMLPNLANLNILMKLTLDSFGEREIPGLGYLRKLQTLRILE ARKLINLDGLEHLQLLKKFYLSYCDVLETLPSLSNSTKLDYVRINSCCLLSDIGSLGESLSHIDMSRCPIVAALLASPLLEAPDRAGSTHTETMQAPSVP PLSKLANLRTLSLECTEIQHLLSPELVLDFSAHRSMEKLSIIRCKQLIQISGIESLQSLRELRLPCCVSIRKLPNLSSLKELRLLDIDVCTNLTEVTGLE KLESFTSLYMRDCILELPSLPKNMSSLNIIYCRQLTDVMGIEKFKSLEFLYMESCTRITKLPDLSRFKRLHTLNVRGCIHLTELIGMENLVSLNVLMMDG LLADKYEHLLPHCMSRMPTYRHLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10011242 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10011240 [exp]	1.4	0.8523
AT1G27170			transmembrane receptors;ATP bi...		Lus10011241 [exp]	2.4	0.8162
AT1G01490			Heavy metal transport/detoxifi...		Lus10039285 [exp]	6.0	0.7759
AT1G78410			VQ motif-containing protein (....		Lus10038502 [exp]	10.5	0.8256
AT3G62930			Thioredoxin superfamily protei...		Lus10005941 [exp]	11.2	0.7964
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10033866 [exp]	12.2	0.8018
					Lus10003631 [exp]	17.1	0.7726
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10016941 [exp]	18.3	0.8025
AT2G42770			Peroxisomal membrane 22 kDa (M...		Lus10001421 [exp]	24.7	0.7554
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10039772 [exp]	31.6	0.7034

Compare expression of checked genes

Lus10011242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.