Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05000 364 / 4e-130 VPS28-2, VPS28-1 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2) AT4G21560 357 / 5e-127 VPS28-1 vacuolar protein sorting 28, vacuolar protein sorting-associated protein 28 homolog 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018442 [exp] 393 / 3e-141 AT4G05000 384 / 1e-137 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2) Lus10027229 [exp] 52 / 2e-08 AT4G21380 54 / 7e-09 receptor kinase 3 (.1) Lus10027228 [exp] 0 / 1 AT4G05000 126 / 1e-50 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G035500 [exp] 384 / 1e-137 AT4G05000 366 / 8e-131 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2) Potri.011G043800 [exp] 376 / 7e-135 AT4G05000 364 / 7e-130 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0596 [flax] [poplar] VPS23_C PF03997 [flax] [poplar] VPS28 VPS28 protein
Representative CDS sequence Show only first row Show all	>Lus10011243 pacid=23147167 polypeptide=Lus10011243 locus=Lus10011243.g ID=Lus10011243.BGIv1.0 annot-version=v1.0 ATGGAGGTGAAGCTATGGAGCGACAAGCGGGAGCGAGAGATGTACGAGAACTTTGCGGAGCTCTATGCGATAATCAAGGCTACTGAGAAGCTCGAGAAGG CCTACGTCCGCGACATCATCTCCTCATCAGAGTACGAGTCCGAATGCCAGAAGCTCATCGCGCATTTCAAGACACTCTCCTCAACCTTAAAGGACACTAT CCCGAGCATTGAGAGGTTTGCAGACACCTACAAGATGGACTGCCCCGCGGCTATAAATCGGCTTGTGATATCTGGTGTTCCTGCCACGGTGGAACACAGG ACCGCAGTGGCTGCATCTTCGACTACATCGGCTGCAACTGTCGCAGAGTGCGTGCAGAACTTTATCACAGCCATGGACTCGTTGAAGCTGAACATGGTTG CGGTTGACCAGGTGCATCCTTTGCTGTCCGATTTGTCGGCTTCGCTTAACAAGCTGAGCATCTTGCCACCCGATTTCGAAGGGAAGATCAAGATGAAGGA GTGGATTGCGAGGCTGGCTAAGATGGGGGCGTCTGATGAGCTGACCGAGCAGCAGTCTAGGCAGCTTCACTTCGATCTCGAGTCCTCGTACAACTCGTTC ATGGCTGCTTTGCCTAGCTCCGGTACATGA
AA sequence Show only first row Show all	>Lus10011243 pacid=23147167 polypeptide=Lus10011243 locus=Lus10011243.g ID=Lus10011243.BGIv1.0 annot-version=v1.0 MEVKLWSDKREREMYENFAELYAIIKATEKLEKAYVRDIISSSEYESECQKLIAHFKTLSSTLKDTIPSIERFADTYKMDCPAAINRLVISGVPATVEHR TAVAASSTTSAATVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLSASLNKLSILPPDFEGKIKMKEWIARLAKMGASDELTEQQSRQLHFDLESSYNSF MAALPSSGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10011243 [exp]	0	1
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Lus10018687 [exp]	1.0	0.8289
AT3G30390			Transmembrane amino acid trans...		Lus10007716 [exp]	3.5	0.7794
AT3G52870			IQ calmodulin-binding motif fa...		Lus10003257 [exp]	3.9	0.7717
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10035419 [exp]	4.9	0.8218
AT5G15460		MUB2	membrane-anchored ubiquitin-fo...		Lus10013190 [exp]	4.9	0.7791
AT5G36290			Uncharacterized protein family...		Lus10026995 [exp]	11.2	0.7381
AT2G45210			SAUR-like auxin-responsive pro...		Lus10030295 [exp]	23.2	0.6483
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Lus10039576 [exp]	27.2	0.6978
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10038818 [exp]	29.7	0.7144
AT2G23090			Uncharacterised protein family...		Lus10019287 [exp]	29.7	0.7306

Compare expression of checked genes

Lus10011243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.