Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61290 464 / 2e-166 ATSYP124, SYP124 syntaxin of plants 124 (.1) AT1G11250 438 / 3e-156 ATSYP125, SYP125 syntaxin of plants 125 (.1) AT4G03330 404 / 1e-142 ATSYP123, SYP123 syntaxin of plants 123 (.1) AT3G11820 344 / 5e-119 PEN1, AT-SYR1, ATSYR1, ATSYP121, SYP121 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) AT3G52400 307 / 6e-104 ATSYP122, SYP122 syntaxin of plants 122 (.1) AT3G03800 248 / 2e-81 ATSYP131, SYP131 syntaxin of plants 131 (.1) AT1G08560 248 / 4e-81 KN, ATSYP111, SYP111 KNOLLE, syntaxin of plants 111 (.1) AT5G08080 234 / 7e-76 ATSYP132, SYP132 syntaxin of plants 132 (.1.2.3) AT2G18260 186 / 3e-57 ATSYP112, SYP112 syntaxin of plants 112 (.1) AT5G46860 57 / 5e-09 SGR3, ATVAM3, ATSYP22, VAM3 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018441 [exp] 562 / 0 AT1G61290 491 / 4e-177 syntaxin of plants 124 (.1) Lus10006735 [exp] 494 / 2e-178 AT1G61290 491 / 3e-177 syntaxin of plants 124 (.1) Lus10020089 [exp] 477 / 3e-170 AT1G61290 467 / 2e-166 syntaxin of plants 124 (.1) Lus10016173 [exp] 362 / 2e-125 AT3G11820 432 / 2e-152 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10021263 [exp] 359 / 2e-124 AT3G11820 436 / 3e-154 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10013589 [exp] 355 / 3e-123 AT3G11820 437 / 2e-155 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10029373 [exp] 351 / 1e-121 AT3G11820 441 / 4e-157 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10021988 [exp] 280 / 1e-93 AT1G08560 388 / 2e-136 KNOLLE, syntaxin of plants 111 (.1) Lus10042527 [exp] 278 / 1e-92 AT1G08560 391 / 2e-137 KNOLLE, syntaxin of plants 111 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G035400 [exp] 482 / 1e-173 AT1G61290 490 / 8e-177 syntaxin of plants 124 (.1) Potri.011G043700 [exp] 474 / 3e-170 AT1G61290 456 / 3e-163 syntaxin of plants 124 (.1) Potri.006G202200 [exp] 361 / 1e-125 AT3G11820 412 / 3e-145 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.016G068600 [exp] 350 / 3e-121 AT3G11820 421 / 5e-149 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.013G053200 [exp] 291 / 6e-98 AT1G08560 430 / 8e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.019G030800 [exp] 283 / 9e-95 AT1G08560 431 / 3e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.019G036700 [exp] 247 / 8e-81 AT3G03800 391 / 1e-137 syntaxin of plants 131 (.1) Potri.007G123000 [exp] 225 / 2e-71 AT3G03800 300 / 1e-100 syntaxin of plants 131 (.1) Potri.007G023100 [exp] 205 / 1e-64 AT2G18260 352 / 3e-122 syntaxin of plants 112 (.1) Potri.009G117900 [exp] 196 / 3e-61 AT2G18260 298 / 4e-101 syntaxin of plants 112 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00804 [flax] [poplar] Syntaxin Syntaxin CL0445 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10011244 pacid=23147129 polypeptide=Lus10011244 locus=Lus10011244.g ID=Lus10011244.BGIv1.0 annot-version=v1.0 ATGAATGATCTTCTTTCGAGCTCGTTCAAGAAGTACAGCGACATGAGGCAGCAGTCTCAGGCGGACAATCTCGAGGCAGGGAACTCGAACTCGAACCTGG ACAAGTTCTTCCAGGGCGTCGAGAGTGTCAAGGATGACATGAAGTCGGTGGAGAAGATGTACAAATCAATACAAGAGGCGAACGAGGAGTGCAAGGTCTT GCATAATGCCAAGAGCGTGAAGGCTCTGAGGGCCAAGATGGACGCCGACGTTGGTCAGGTCTTGAAGAGGGTGAAGCTAATCAAGGGGAAGCTCGAAGCC CTTGAGAGGTCGAATGCTGCCGCGCGCAGCATTGCAGGGTGCGGTCCAGGTTCTTCAGCGGACCGCACCAGGACCTCTGTCGTGGGAGGGTTGGGTAAGA AGCTAAAGGACCTGATGGACGACTTCCAAAACCTGAGGGCTAAGATGTCCGCAGAGTACAAGGAGACCGTGGAGAGGAGGTACTATACCATTACCGGGGA GAAGGCAAGCGAGGACTTGATCGACGACCTGATCTCTAGCGGGGAGAGCGAGAGCTTCCTGCAGAAGGCGATCCAGGAGCAAGGCAGGGGCCAGATTCTC GACACGATATCGGAGATTCAGGAAAGACACGACGGGGTGAAGGAGATTGAGAAGAACCTGATCGAGCTGCACCAGGTCTTCCTCGACATGGCTGCCCTCG TCGAGGCTCAGGGGCACCAGCTGAACGACATAGAGAGCCACGTGATGCACGCTAGCTCGTTCGTGCACCGTGGGACCGAGCAGCTGCAGGAGGCTAGAGA GTACCAGAAGAGCTCGAGGAAGTGGACTTGCTATGCCATTATTCTTGGTCTTGTGTTCATAATTCTTCTTCTGCTGCCTCTCATTCCTTCCATCATTGCT CTCATTCGCAGTAGCCGGTGA
AA sequence Show only first row Show all	>Lus10011244 pacid=23147129 polypeptide=Lus10011244 locus=Lus10011244.g ID=Lus10011244.BGIv1.0 annot-version=v1.0 MNDLLSSSFKKYSDMRQQSQADNLEAGNSNSNLDKFFQGVESVKDDMKSVEKMYKSIQEANEECKVLHNAKSVKALRAKMDADVGQVLKRVKLIKGKLEA LERSNAAARSIAGCGPGSSADRTRTSVVGGLGKKLKDLMDDFQNLRAKMSAEYKETVERRYYTITGEKASEDLIDDLISSGESESFLQKAIQEQGRGQIL DTISEIQERHDGVKEIEKNLIELHQVFLDMAALVEAQGHQLNDIESHVMHASSFVHRGTEQLQEAREYQKSSRKWTCYAIILGLVFIILLLLPLIPSIIA LIRSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Lus10011244 [exp]	0	1
					Lus10018716 [exp]	2.4	0.9039
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10026197 [exp]	4.5	0.9210
AT4G38380			MATE efflux family protein (.1...		Lus10026829 [exp]	5.2	0.8676
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10034393 [exp]	8.1	0.8932
AT3G56570			SET domain-containing protein ...		Lus10029539 [exp]	8.8	0.9161
					Lus10001030 [exp]	9.9	0.7994
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	9.9	0.9194
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002775 [exp]	10.6	0.9126
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10028262 [exp]	10.7	0.8770
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10043393 [exp]	12.0	0.8857

Compare expression of checked genes

Lus10011244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.