Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32010 362 / 8e-109 B3 HSL1, HSI2-L1, VAL2 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) AT4G21550 357 / 8e-108 B3 HSI2-L2, VAL3 VP1/ABI3-like 3 (.1) AT2G30470 357 / 6e-107 B3 HSI2, VAL1 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) AT3G26790 91 / 2e-19 B3 FUS3 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) AT3G24650 91 / 3e-18 B3 SIS10, ABI3 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) AT1G28300 80 / 2e-15 B3 LEC2 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) AT2G36080 73 / 2e-14 B3 ABS2, NGAL1 AP2/B3-like transcriptional factor family protein (.1.2) AT1G13260 74 / 1e-13 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT2G46870 71 / 1e-12 B3 NGA1 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) AT5G06250 70 / 1e-12 B3 AP2/B3-like transcriptional factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018440 [exp] 1075 / 0 AT4G32010 487 / 1e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10022741 [exp] 317 / 2e-92 AT4G32010 748 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10025226 [exp] 228 / 2e-61 AT4G32010 808 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10025142 [exp] 210 / 2e-55 AT4G32010 794 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10014169 [exp] 103 / 4e-22 AT4G21550 237 / 4e-68 VP1/ABI3-like 3 (.1) Lus10041521 [exp] 97 / 2e-21 AT3G26790 255 / 1e-83 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10012572 [exp] 93 / 5e-20 AT3G26790 259 / 4e-85 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10022820 [exp] 93 / 1e-19 AT3G24650 313 / 1e-100 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Lus10011888 [exp] 88 / 2e-17 AT3G24650 312 / 6e-96 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G035300 [exp] 565 / 0 AT4G32010 483 / 3e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.011G043600 [exp] 563 / 0 AT4G32010 479 / 5e-157 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.013G157500 [exp] 376 / 4e-113 AT2G30470 767 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.016G136500 [exp] 347 / 5e-102 AT4G32010 789 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.019G130300 [exp] 330 / 9e-97 AT2G30470 757 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.006G108300 [exp] 239 / 9e-65 AT4G32010 743 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.002G252000 [exp] 91 / 3e-18 AT3G24650 499 / 2e-167 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Potri.017G061200 [exp] 87 / 3e-18 AT3G26790 288 / 8e-97 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.001G322700 [exp] 86 / 9e-18 AT3G26790 279 / 3e-93 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.004G045800 [exp] 83 / 2e-16 AT1G28300 201 / 2e-60 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07496 [flax] [poplar] zf-CW CW-type Zinc Finger CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10011245 pacid=23147120 polypeptide=Lus10011245 locus=Lus10011245.g ID=Lus10011245.BGIv1.0 annot-version=v1.0 ATGACTACTCCGTCACCGTCTCCTCCTCCTCCTCCTCCGCCTCCCTCGGCTCCCTATCTTCCGCCACCAACTGCTCCCGCGGCCCCGACCTGGGCCAAGT GTTTCAATTCCGTCTGCTCGGAGAAGAAGTCCAAGAAAGCCTGGCGTCTCCGTTCCGGCGAGCAAGCCGAGCTCTGCGAACCCTGTTTTGCCGCGTATGA GGAAGGTAGATTCTGCGAGACTTTTCACTTGAACGACTCTGGTTGGAGGTGCTGTGAGTCCTGCAGAAAGCGTGTGCACTGTGGCTGTATAGTCTCAGTT AGTGCCTTTACATTATTGGATGCCGGTGGCATTGAGTGTGTGACTTGCGCAAGGAAGCATGCTGTTGTGACATCATCAAATCCTACATGGCAAACAGCTT TCTATTACCATGGATATATAGCTGACAGAGGAAAGGATGCTTCTGTAAAAAAATTGAATTACTTAGCTAAATCAGGTCCTGTGCCTTGGAGGCAAGCACC TAGTTTGTTCAATTCTTCTATTACTCAGACTGTTGCGCATCCTATGTTTCATTCTGAAGCTGACAGGCTCAATGCTACTGAGAAATTATCTTCCGCTTCC CTTGAAAAAGGAAAACCCGATAATTCCGTAAATGGAAATACGAAGCACAGTTCAGGAGACAAAATTGAGAATGGTCATCCAGGTCCATCTAATGTGGAAC GACAGTCTTCTTCTATAAGGGAAGATTCATCCACTTCACAAATTGGATTTAGTAGAACCTACACATCTATAAATGAAACAAAGGGGAAAGAACCTGGTTG TTCTACGATTCCTATGCCAGCGACTTCATTGGCAATTGTCGTGCATAACGGAGGAGGTGATGCACCTGTTGAGCCTCGTCCTCGTGGAAGGCCCCGTGGA AAAAGCCAGTTACTTCCGAGGTACTGGCCAAGGTTTACTAATGAGGAGCTGCAACGAATATCTGGGAAAACAAATGCTGTAATAACTCCTCTGTTTGAGA AAATGCTGAGTGCTAGTGATGCTGGCCGAGTCGGGCGATTGGTGCTGCCCAAAAAATGTGCCGAGACCTATTTGCCACCAATTTCACAAGCTGAAGGTCT GCCTCTGAAGGTCCACGATTATACAGGCAAGGAGTGGGTATTCCAATTCCGCTTCTGGCCCAATAACAACAGCAGGATGTACGTTCTGGAGGGAGTTACT CCTTGCATTCAGAGCATGTTCTTGCAAGCTGGTGACATCGTGACGTTCAGTCGGTTAGATCCGGGAGGGAAATTGGTGATGGGATTCAGAAAAGCTATTA ACGTTAATCCGCCATCTTCCGAATACCCGGCTATCTCAAATGCACAGGATACTGAATCAACCAACCCTCCAACTGGCACTTCTGGAAATGGAGAAGGTGA GGTGTCCGACCGTCCTCCATGGTATAAGGTTGACAAGTCGGATTACATTGCCACTCCTTCAGAAGTTATCGCTGCCAAACCTTCGTCGAAAAAGAGGAAG AACAGCAGCAGCGTATCGGGTTCGAAGGGCAAGAGCCTGAAAATGGGCAGTGACGATCTGATTCAACTGCAGGTAACGTGGGAAGAATCACAAGGGTTGC TCCGCCCTCCTGCGGAACATCCTAGTCCCAGCAGCGTTGTCTCGATTGACGGATATGATTTCGAGGAATTCGAGGAGGCACCGGTAATTGGGAAGCCAGC GATTTTAGCAACTGATAAAGCTGGATGGGGAAGCGCGGCGGTTGCGGAGGGGGGAGGGACCGACGTGATTCTAGAAGAAGGCGGCGCCATGACGACAAAG CATCCTCGACACAAGCCTGGATGCTCCTGCATCGTGTGCATCCAGCCTCCGAGCGGGAAAGGCCCAAAGCACAAGCCAGTTGAGCCTCGTCCTCGTGGAA GGCCCCGTGGAAAAAGCCAGTTACTTCCGAGGTACTGGCCAAGGTTTACTAATGAGGAGCTGCAACGAATATCTGGGAAAACAAATGCTGTAATAACTCC TCTGTTTGAGAAAATGCTGAGTGCTAGTGATGCTGGCCGAGTCGGGCGATTGGTGCTGCCCAAAAAATGTGCCGAGACCTATTTGCCACCAATTTCACAA GCTGAAGGTCTGCCTCTGAAGGTCCACGATTATACAGGCAAGGAGTGGGTATTCCAATTCCGCTTCTGGCCCAATAACAACAGCAGGATGTACGTTCTGG AGGGAGTTACTCCTTGCATTCAGAGCATGTTCTTGCAAGCTGGTGACATTGTGACGTTCAGTCGGTTAGATCCGGGAGGGAAATTGGTGATGGGATTCAG AAAAGCTATTAACGTTAATCCGCCATCTTCCGAATACCCGGCTATCTCAAATGCACAGGATAGTGAATCAACCAACCCTCCAGCTGGCACTTCTGGAAAT GGAGAAGGTGAGGTGTCCGACCGTCCTCCATGGTATAAGGTTGACAAGTCGGATTACATTGCCACTCCTTCAGAAGTTATCGCTGCCAAACCTTCGTCGA AAAAGAGGAAGAACAGCAGCAGCGTATCGGGTTCGAAGGGCAAGAGCCTGAAAATGGGCAGTGACGATCTGATTCAACTGCAGGTAACGTGGGAAGAATC ACAAGGGTTGCTCCGCCCTCCTGCGGAACATCCTAGTCCCAGCAGCGTTGTCTCGATTGACGGATATGATTTCGAGGAATTCGAGGAGGCACCGGTAATT GGGAAGCCAGCGATTTTAGCAACTGATAAAGCTGGTAACAAATTCCAATGGACTCAATGTGAAGATTGTTCGAAATGGCGAAAGATACCTCTTGACGCTC TTCTTCCCTTCCAATGGACGTGTTCTCGTAACTTATGGGATCTCGAAAAGTATATATATATTGGAACTCTACGTCCTCTTATGGCTCAGATTGCTTGTAT TCCGTCGTTAGTCTTAAATTGTGATTCAAATGCCTTGTCTTTCAGAGCATCGTGCGTAGCTGATCAAGAATCGAGTAGAGAACTGCTCAAAGATCTTCTG CCTCCCCAACCCTTAGCTGCTCCCAAGAAACTGAAGGCTGCTGCTATACCGGAAAAGGACGGTGGAGAAGCTGCCGTTGCAGCGGGAGGAGGGACCGACG TGATTCTAGAAGAAGGCGGCGCCATGACGACAAAGCATCCTCGACAAAAGCCTGGATGCTCCTGCATCGTGTGCATCCAGCCTCCGAGTGGGAAAGGCCC CAAGCACAAGCCGGACTGTACATGCACCGTCTGCGAAGCTGTGAAGCGGCGCTTCACCACTCAACAGATCAAGAGGAACGAGAGGAAAGAAGCCGAATCT AAACAACTGAAGCAGCTACCCCCCCCGCCAGCTCAGCAACTGCCAGAGACGACTGGCGGTCATGATGATGACGACGATGATGACGCGGATCCTCTGAATT CAGGTGAAACTGGAAACAATAGCAGCGGCAGCAATGAGGCGAGCAAGAGAATGAAATCAGCCTCCAGCTCTCCTTTTAAAGGGCGAATCGACTTGAACAT CAAACCAGAACGAGAGGAAGAAGCTTTGCCTGCCTTGGATAGCGTATTCACGAAGACGCTGCACAATGTAGAAGAGATGTCGGCATCAAGGCCGCAGAAG GTGTCTTCATCACCAACCTCTGGAAGCGACGGCCCTCGCCAGCCCGAGGAGACCACAACCTCGCCACCTAATGATGCTAGTCAGCTGGCATCTAAGCTGA TCCTTGATGCCGCATTACAGATGAAGGTGGTATCACAGACCTATGGCAACGATGGTAATAATACTCAACAACTCGCAACCGGCGATCAGATTCTCGTCGC AGCAGGCGAAGGAAAATCGACCGAAAGTGATGACTCATCACTAGCAAAACTAACAGAAGAAGCATTACCTGCATCTGCCTCTCCCCAGCAGCTACTAGAC AGCAACCTACCGAATAGCAATAAGCCCGCCACTCCCCCGAACCCGCAATCTACAACCAGCCTCGACTGCCCAACCCGATTGACGACGACTCAGTGA
AA sequence Show only first row Show all	>Lus10011245 pacid=23147120 polypeptide=Lus10011245 locus=Lus10011245.g ID=Lus10011245.BGIv1.0 annot-version=v1.0 MTTPSPSPPPPPPPPSAPYLPPPTAPAAPTWAKCFNSVCSEKKSKKAWRLRSGEQAELCEPCFAAYEEGRFCETFHLNDSGWRCCESCRKRVHCGCIVSV SAFTLLDAGGIECVTCARKHAVVTSSNPTWQTAFYYHGYIADRGKDASVKKLNYLAKSGPVPWRQAPSLFNSSITQTVAHPMFHSEADRLNATEKLSSAS LEKGKPDNSVNGNTKHSSGDKIENGHPGPSNVERQSSSIREDSSTSQIGFSRTYTSINETKGKEPGCSTIPMPATSLAIVVHNGGGDAPVEPRPRGRPRG KSQLLPRYWPRFTNEELQRISGKTNAVITPLFEKMLSASDAGRVGRLVLPKKCAETYLPPISQAEGLPLKVHDYTGKEWVFQFRFWPNNNSRMYVLEGVT PCIQSMFLQAGDIVTFSRLDPGGKLVMGFRKAINVNPPSSEYPAISNAQDTESTNPPTGTSGNGEGEVSDRPPWYKVDKSDYIATPSEVIAAKPSSKKRK NSSSVSGSKGKSLKMGSDDLIQLQVTWEESQGLLRPPAEHPSPSSVVSIDGYDFEEFEEAPVIGKPAILATDKAGWGSAAVAEGGGTDVILEEGGAMTTK HPRHKPGCSCIVCIQPPSGKGPKHKPVEPRPRGRPRGKSQLLPRYWPRFTNEELQRISGKTNAVITPLFEKMLSASDAGRVGRLVLPKKCAETYLPPISQ AEGLPLKVHDYTGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMFLQAGDIVTFSRLDPGGKLVMGFRKAINVNPPSSEYPAISNAQDSESTNPPAGTSGN GEGEVSDRPPWYKVDKSDYIATPSEVIAAKPSSKKRKNSSSVSGSKGKSLKMGSDDLIQLQVTWEESQGLLRPPAEHPSPSSVVSIDGYDFEEFEEAPVI GKPAILATDKAGNKFQWTQCEDCSKWRKIPLDALLPFQWTCSRNLWDLEKYIYIGTLRPLMAQIACIPSLVLNCDSNALSFRASCVADQESSRELLKDLL PPQPLAAPKKLKAAAIPEKDGGEAAVAAGGGTDVILEEGGAMTTKHPRQKPGCSCIVCIQPPSGKGPKHKPDCTCTVCEAVKRRFTTQQIKRNERKEAES KQLKQLPPPPAQQLPETTGGHDDDDDDDADPLNSGETGNNSSGSNEASKRMKSASSSPFKGRIDLNIKPEREEEALPALDSVFTKTLHNVEEMSASRPQK VSSSPTSGSDGPRQPEETTTSPPNDASQLASKLILDAALQMKVVSQTYGNDGNNTQQLATGDQILVAAGEGKSTESDDSSLAKLTEEALPASASPQQLLD SNLPNSNKPATPPNPQSTTSLDCPTRLTTTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30470	B3	HSI2, VAL1	VP1/ABI3-LIKE 1, high-level ex...		Lus10011245 [exp]	0	1
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10042329 [exp]	1.7	0.9481
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10026612 [exp]	2.6	0.9158
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10039677 [exp]	3.0	0.9295
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10016103 [exp]	3.2	0.9436
AT1G48950			C3HC zinc finger-like (.1)		Lus10038947 [exp]	4.2	0.9159
AT5G41580			RING/U-box superfamily protein...		Lus10032307 [exp]	5.8	0.9005
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10003385 [exp]	6.8	0.8963
AT5G46070			Guanylate-binding family prote...		Lus10025456 [exp]	6.9	0.9104
AT1G27750			nucleic acid binding (.1)		Lus10018694 [exp]	9.5	0.9041
AT1G05120			Helicase protein with RING/U-b...		Lus10030044 [exp]	9.9	0.8614

Compare expression of checked genes

Lus10011245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.