Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21540 582 / 0 SPHK1 sphingosine kinase 1 (.1.2.3) AT4G21534 577 / 0 SPHK2 sphingosine kinase 2, Diacylglycerol kinase family protein (.1) AT5G23450 112 / 7e-26 ATLCBK1 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) AT5G51290 79 / 3e-15 Diacylglycerol kinase family protein (.1) AT2G46090 48 / 8e-06 Diacylglycerol kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018439 [exp] 972 / 0 AT4G21540 578 / 0.0 sphingosine kinase 1 (.1.2.3) Lus10010161 [exp] 100 / 6e-22 AT5G23450 993 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Lus10017366 [exp] 100 / 6e-22 AT5G23450 1076 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Lus10016714 [exp] 86 / 2e-17 AT5G51290 635 / 0.0 Diacylglycerol kinase family protein (.1) Lus10007917 [exp] 47 / 2e-05 AT2G46090 453 / 2e-160 Diacylglycerol kinase family protein (.1) Lus10027086 [exp] 47 / 2e-05 AT2G43940 163 / 5e-46 HARMLESS TO OZONE LAYER 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036388 [exp] 46 / 4e-05 AT2G46090 439 / 9e-155 Diacylglycerol kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G043500 [exp] 684 / 0 AT4G21540 651 / 0.0 sphingosine kinase 1 (.1.2.3) Potri.008G002100 [exp] 100 / 5e-22 AT5G23450 995 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Potri.010G255600 [exp] 97 / 3e-21 AT5G23450 1011 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Potri.004G233300 [exp] 72 / 3e-13 AT5G51290 726 / 0.0 Diacylglycerol kinase family protein (.1) Potri.002G162900 [exp] 49 / 6e-06 AT2G46090 492 / 3e-175 Diacylglycerol kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF00781 [flax] [poplar] DAGK_cat Diacylglycerol kinase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10011246 pacid=23147133 polypeptide=Lus10011246 locus=Lus10011246.g ID=Lus10011246.BGIv1.0 annot-version=v1.0 ATGGACGAACCCGGATCATCGCCGCAGTCAGTGTTCTCCGACCGGGTCAAGATCAACGGCTCGTCAGTCCCGGCGGCGCTGACTCTCACCTCCGAAGGCA AGCTCCGGTGGACTGACGGCCAGGATCGGCAGCGGTGGCTGGTGCTGGAGAAGCAGGTGCTCGGATTCTCAGTCGTCGATGGTACGAAGATAGTGGTGAA GACTGTCGTACACAGCGAAGCAGCTGGTTGGTGCTGTTGCTGCTGTATTGGCGGGAGCAGGGGGGATCAGCTGTTGAGGAAGGATTTCGTCTTCGAGCCT GTTGATGGCGATTCGTTGAACCTCTGGCGCCAGTGCATCGGCGATTACCTCGATTCGTTAGGTCGGCCGAAGAGGCTGCTTGTGTTTGTGAATCCGTACG GTGGGAAGAGAATTGCTCCCAAGGTGTATTACGATCATGTGAAGCCATTACTCGAGGATGCTGGTGTACAGATAACATTGCAAGAAACGGAGCATAGGCT TCATGCAAAGGAAGTTGTGAGCAGCCTGGAACTTTCCAAATACGATGGCATTGTTTGTGTCAGCGGAGATGGTATCCTCGTAGAGGTGGTAAATGGTCTT CTGGAGAGGCAGGACTGGAAGGATGCTATAAAGATGCCTCTTGGAGTCGTCCCCGCAGGTACAAGTAATGGCATGGTAAAATCCCTTCTCGATGCAGTTG GCGAACGCTGCACCCCGTCAAATGCAGTTCTTGCAATCATCCGAGGCCGTAAAACCTCACTGGATGTAGCCACTGTCTTGCAAGGAGACAACAAATACTA TAGCGTTTTGATGCTCGCATGGGGTCTGGTGGCGGATATTGACATCGAGTCTGAGAAATATCGGTGGATGGGGAGTTCTCGCATCGACTTCTATGCTATT CAACGGCTATTCAGTCTAAGGCAGTACAATGGGCGCATCTCTTTCGTGCCCGCACCGGGCTTCGAATCTTACGGAGAGCCGTTCAATCACAACACTGGAC TCACTAGCTTTCGAGAATCCCGCGATTTCAGCCGAGAAAAGCTTGTGAAAGTCCAACCGTACGGTTACCATGGACCCGACCTCGAATTGCTGAACCGGGA GTGGAGAACGATTGATGGACCGTTCATTTCAGTCTGGCTTCACAACGTAGCTTGGGGTGGTGAGAATACCATGGCAGCACCCGATGCAAAGTTCTCAGAT GGCTGTTTGGACTTGATACTCATTAAAGATTGCCCAAGGCTAGCTTTGCTCTCGTTCATGACGGAACTAGGCAATGGTGGTCATGTGAAATCCCCACACG TTATGTACCTCAAGGTGAAGGCGTTCATATTGGAGCCCGGCCAACGAGTGAACGAGCCCTCCGTTGGAGGGATCATAGACGTGGACGGCGAGGTGTTGGC CAGAGGAAACGGGACGTACAAGTGCGAGGAGGAGACGCTGATGGCTTATGACAAGCTATTGATCACTGTGAACCAAGGCTTAGCCACCATCTTTTCTCCC GTGTAG
AA sequence Show only first row Show all	>Lus10011246 pacid=23147133 polypeptide=Lus10011246 locus=Lus10011246.g ID=Lus10011246.BGIv1.0 annot-version=v1.0 MDEPGSSPQSVFSDRVKINGSSVPAALTLTSEGKLRWTDGQDRQRWLVLEKQVLGFSVVDGTKIVVKTVVHSEAAGWCCCCCIGGSRGDQLLRKDFVFEP VDGDSLNLWRQCIGDYLDSLGRPKRLLVFVNPYGGKRIAPKVYYDHVKPLLEDAGVQITLQETEHRLHAKEVVSSLELSKYDGIVCVSGDGILVEVVNGL LERQDWKDAIKMPLGVVPAGTSNGMVKSLLDAVGERCTPSNAVLAIIRGRKTSLDVATVLQGDNKYYSVLMLAWGLVADIDIESEKYRWMGSSRIDFYAI QRLFSLRQYNGRISFVPAPGFESYGEPFNHNTGLTSFRESRDFSREKLVKVQPYGYHGPDLELLNREWRTIDGPFISVWLHNVAWGGENTMAAPDAKFSD GCLDLILIKDCPRLALLSFMTELGNGGHVKSPHVMYLKVKAFILEPGQRVNEPSVGGIIDVDGEVLARGNGTYKCEEETLMAYDKLLITVNQGLATIFSP V

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10011246 [exp]	0	1
AT2G17760			Eukaryotic aspartyl protease f...		Lus10028411 [exp]	1.0	0.9245
AT5G46080			Protein kinase superfamily pro...		Lus10025455 [exp]	2.4	0.9044
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10023789 [exp]	2.8	0.9119
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015400 [exp]	5.5	0.8733
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025136 [exp]	7.3	0.8782
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10042776 [exp]	8.7	0.8684
AT3G09760			RING/U-box superfamily protein...		Lus10026501 [exp]	8.8	0.8767
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10034525 [exp]	9.8	0.8612
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10019996 [exp]	10.4	0.8415
AT1G63420			Arabidopsis thaliana protein o...		Lus10024519 [exp]	11.0	0.8803

Compare expression of checked genes

Lus10011246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.