Plant FIBer expression Database

Lus10011247 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G11240 86 / 4e-21 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018438
[exp]
263 / 1e-90 AT1G11240 122 / 6e-35 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G043400
[exp]
116 / 6e-33 AT1G11240 115 / 4e-32 unknown protein
Potri.004G035200
[exp]
91 / 5e-23 AT1G11240 94 / 6e-24 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09805 Nop25 Nucleolar protein 12 (25kDa)
Representative CDS sequence
>Lus10011247 pacid=23147113 polypeptide=Lus10011247 locus=Lus10011247.g ID=Lus10011247.BGIv1.0 annot-version=v1.0
ATGGCGGACGAAATTCAATACGGCGAGCCACAGACATCGGCGCACATAAAGAAACGATCGCTACGGAACAAATCTCTCGCCGTATCGTTCAACGAGAAGG
ATCTCAAAGACTACGTCAATGGATTCCACAAGAGGAAGAAGAAGAGACGAAAGGAAGCTCACAAGCAGCAGGACGAGGCGCTGAGGCGAAAGCGCATCGA
ACTGCGCAAGAAGAGGAAGTTGGAAAACGAAGTTTATCCGAACGAAGGAGGTGAAGGGGGCGGTAAGGATGATGATGATGATGAGGAGGAGGAGGAAGTT
ACTGAGCCAGCTACTTCAGTTGCTGGAACAACAATGTACGACAACGGGGACTTGAAGGTAACCGTGACAACTAGCGAGATCTCCCGCGAGGACGACTTCG
AGCCAAAGGAATCAGCGCCACGAGCAATGGTGCTTCCCAAGAAGAACCAGAAGTTATCCATCAGCAAGAAGCAACCATCGTTCAAGAAATCCGGCAACCG
CAGATCAGGGGCAAAGACTCAGTCCAAACGAGATAAACGGAAAGCGAAGATAACTGACCGCCGGCGATAA
AA sequence
>Lus10011247 pacid=23147113 polypeptide=Lus10011247 locus=Lus10011247.g ID=Lus10011247.BGIv1.0 annot-version=v1.0
MADEIQYGEPQTSAHIKKRSLRNKSLAVSFNEKDLKDYVNGFHKRKKKRRKEAHKQQDEALRRKRIELRKKRKLENEVYPNEGGEGGGKDDDDDEEEEEV
TEPATSVAGTTMYDNGDLKVTVTTSEISREDDFEPKESAPRAMVLPKKNQKLSISKKQPSFKKSGNRRSGAKTQSKRDKRKAKITDRRR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G11240 unknown protein Lus10011247
[exp]
0 1
AT3G07590 Small nuclear ribonucleoprotei... Lus10003727
[exp]
1.0 0.9485
AT3G22630 PRCGB, PBD1 20S proteasome beta subunit D1... Lus10041194
[exp]
1.4 0.9461
AT2G03170 ASK14 SKP1-like 14 (.1) Lus10031171
[exp]
4.5 0.9017
AT3G13780 SMAD/FHA domain-containing pro... Lus10037628
[exp]
5.2 0.8972
AT2G19790 SNARE-like superfamily protein... Lus10012924
[exp]
5.5 0.8986
AT1G26340 B5 #6, B5#6, AT... ARABIDOPSIS CYTOCHROME B5 ISOF... Lus10000651
[exp]
6.0 0.8755
AT5G20570 HRT1, ROC1, RBX... REGULATOR OF CULLINS-1, RING-b... Lus10015667
[exp]
6.2 0.9052
AT1G54250 NRPE8A, NRPB8A,... RNA polymerase Rpb8 (.1) Lus10013760
[exp]
7.4 0.8478
AT1G68760 ATNUDX1, ATNUDT... NUDIX HYDROLASE 1, ARABIDOPSIS... Lus10034784
[exp]
7.5 0.8984
AT5G49210 unknown protein Lus10032604
[exp]
9.2 0.9020

Lus10011247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.