Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57580 726 / 0 Calmodulin-binding protein (.1) AT4G25800 700 / 0 Calmodulin-binding protein (.1.2) AT2G24300 613 / 0 Calmodulin-binding protein (.1.2) AT2G18750 609 / 0 Calmodulin-binding protein (.1.2.3) AT4G31000 502 / 5e-172 Calmodulin-binding protein (.1.2) AT5G62570 328 / 2e-105 Calmodulin binding protein-like (.1.2) AT1G73805 302 / 5e-96 SARD1 SAR Deficient 1, Calmodulin binding protein-like (.1) AT5G26920 250 / 8e-75 CBP60G Cam-binding protein 60-like G (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018437 [exp] 1172 / 0 AT5G57580 746 / 0.0 Calmodulin-binding protein (.1) Lus10001436 [exp] 721 / 0 AT5G57580 809 / 0.0 Calmodulin-binding protein (.1) Lus10001630 [exp] 718 / 0 AT5G57580 811 / 0.0 Calmodulin-binding protein (.1) Lus10019056 [exp] 534 / 0 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10036301 [exp] 533 / 0 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10020686 [exp] 333 / 6e-106 AT4G25800 334 / 1e-106 Calmodulin-binding protein (.1.2) Lus10029861 [exp] 328 / 9e-104 AT4G25800 332 / 2e-106 Calmodulin-binding protein (.1.2) Lus10034121 [exp] 321 / 5e-102 AT5G62570 396 / 1e-133 Calmodulin binding protein-like (.1.2) Lus10043463 [exp] 262 / 5e-78 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G035100 [exp] 877 / 0 AT5G57580 792 / 0.0 Calmodulin-binding protein (.1) Potri.011G043300 [exp] 865 / 0 AT5G57580 770 / 0.0 Calmodulin-binding protein (.1) Potri.011G043200 [exp] 827 / 0 AT5G57580 752 / 0.0 Calmodulin-binding protein (.1) Potri.018G095300 [exp] 761 / 0 AT5G57580 820 / 0.0 Calmodulin-binding protein (.1) Potri.006G187900 [exp] 569 / 0 AT2G24300 770 / 0.0 Calmodulin-binding protein (.1.2) Potri.018G111200 [exp] 566 / 0 AT2G24300 759 / 0.0 Calmodulin-binding protein (.1.2) Potri.015G071800 [exp] 386 / 8e-127 AT5G62570 499 / 4e-173 Calmodulin binding protein-like (.1.2) Potri.012G077000 [exp] 370 / 1e-120 AT5G62570 493 / 1e-170 Calmodulin binding protein-like (.1.2) Potri.012G054900 [exp] 359 / 3e-118 AT1G73805 407 / 1e-139 SAR Deficient 1, Calmodulin binding protein-like (.1) Potri.015G045300 [exp] 355 / 3e-116 AT1G73805 414 / 1e-141 SAR Deficient 1, Calmodulin binding protein-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07887 [flax] [poplar] Calmodulin_bind Calmodulin binding protein-like
Representative CDS sequence Show only first row Show all	>Lus10011248 pacid=23147141 polypeptide=Lus10011248 locus=Lus10011248.g ID=Lus10011248.BGIv1.0 annot-version=v1.0 ATGCAGGCAAAGTCGTATTTGGAGAGGGCGAACGGCAAGAGAGGGCTGGAAGGGAGCTCCGGCGAGGAAGGTCAGCCGGATAGGAAACGGCCTGCTTTAG CTAGCGTGATTGTTGAAGCTTTGAAGGTGGATAGTCTGCAGAAGCTTTGCTCGTCGTTGGAGCCGATTCTCCGGAGAGTTGTTAGTGAAGAAGTGGAGCG TGCTTTGGCGAAACTCGGTCCTGCTAGACTCACGTCGGGATCTTCTCCTAAGTATATTCAAGGCCCAGATGGTAGAAACCTGCAGATGCATTTCAGGTCG AGGTTATCCCTTCCCTTGTTCACTGGCGGGAAAGTAGAAGGTGAACAGGGCACCGCAATCCACATTGTGCTGATCGATGCCAACACGGGCCATGTGGTGA CGTCAGGCCCGGAATCCTCGGCAAAACTGGATGTCGTCGTTCTTGAAGGAGATTTCAACAATGAAGATGATGATACTTGGACTGCCGAGGAGTTTGAGTC TCACGTGGTGAAAGAACGTGAGGGGAAACGGCCGCTGCTTACCGGAGATCTTCAGGTGACTTTGAAAGAAGGTGTGGGAAGTCTTGGTGAGCTGACGTTT ACTGATAATTCGAGCTGGATTAGGAGCAGGAAGTTCAGGCTAGGTTTGAAGGTTGCTTCGGGGTGTTGTCAAGGGGTGAGAATCCGTGAAGGAAAGACTG ATGCCTTTACTGTGAAGGACCACAGAGGAGAATTGTACAAGAAACACTACCCGCCTGCTTTGAGCGACGAAGTCTGGCGATTGGAGAAGATCGGTAAAGA CGGATCTTTCCACAAACGGTTGACCAAGAACGGAATCTTTACTGTGGAGGACTTCCTGCGTCTTGAGGTTCGCGACTCGCAAAAGCTACGCAATATTCTT GGAAGTGGCATGTCGAACAAGATGTGGGATGTTCTGAAAGAGCATGCCAAGACTTGCGTCCTTGGGGGGAAGTTCTACGTCTACTATGCTGAAGATGCAC ATAACATCGGTGTGGTATTCAACAATATCTATCAGTTAAGTGGGTTGATTGCTGATGGGCAGTACCATTCTGCTGACACTCTTTCTGACAATCAGAAGGT GTACGTGGACGGCCTGGTGAAAAGTGCGTACGACAACTGGTCGCAAGTTGTAGAGTATGATGGGAACTCCTTCATGGAGTTCAAGTCGAATGAGAATGAA GTGGAAAACGGTGTGCAAGACCTTCTGGGATCATATGGTCACCAGCAGCAGCATCATGTGGCTTTACCAAATGTGCCGGTACAAGGCCCTCCACCTCCAG AGCAGCAGCCTCCTACCATGGCGGCAGTGCCAACAATTGCAGGGTATACCAACAACATGCCTCCAGAATTCGCGATCCATTCACAAGATGGGAATCTGAA CTCTTCTTCCTTCATATTCGACTCCAGTCCGGCTTCACAGCAGCACCAGTACCACCCAAGGAACGACCATTTACTAGCTCTTGGTCCCCCACAACCCTCC ACGTCATCAACAACCTTCCACGACAGCAATGCAGCACCACCGGAGGTTAACCTGGCCTCACATAGAGGAGTCGACGAATTCTTCACGGAGGAGGAGATCC GCCTGAGAAGCCACGAGATGCTCGAGAACGACGATATGCAGAACCTCCTCCGAATCTTCAGCATGGGAGGAGTCGGAGTAGGAGGTGGAAATGGTGGTCA AGGCTTCCATTCCTTTGAAGATGGCTATCCTTACGCCTCTGCGACTCCATACATGGCGGGGAACGGATCATCGTCCTCAAGCTATGGATTTGCAGACGAG CAGTCCCGTTCATCGGGGAAGGCTGTGGTAGGATGGCTGAAGCTAAAAGCAGCATTGAGATGGGGCATTTTCATCAGGAAGAAAGCTGCCGAAAGGCGCG CTCAGCTCGTCGAACTCGACGATTAA
AA sequence Show only first row Show all	>Lus10011248 pacid=23147141 polypeptide=Lus10011248 locus=Lus10011248.g ID=Lus10011248.BGIv1.0 annot-version=v1.0 MQAKSYLERANGKRGLEGSSGEEGQPDRKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPARLTSGSSPKYIQGPDGRNLQMHFRS RLSLPLFTGGKVEGEQGTAIHIVLIDANTGHVVTSGPESSAKLDVVVLEGDFNNEDDDTWTAEEFESHVVKEREGKRPLLTGDLQVTLKEGVGSLGELTF TDNSSWIRSRKFRLGLKVASGCCQGVRIREGKTDAFTVKDHRGELYKKHYPPALSDEVWRLEKIGKDGSFHKRLTKNGIFTVEDFLRLEVRDSQKLRNIL GSGMSNKMWDVLKEHAKTCVLGGKFYVYYAEDAHNIGVVFNNIYQLSGLIADGQYHSADTLSDNQKVYVDGLVKSAYDNWSQVVEYDGNSFMEFKSNENE VENGVQDLLGSYGHQQQHHVALPNVPVQGPPPPEQQPPTMAAVPTIAGYTNNMPPEFAIHSQDGNLNSSSFIFDSSPASQQHQYHPRNDHLLALGPPQPS TSSTTFHDSNAAPPEVNLASHRGVDEFFTEEEIRLRSHEMLENDDMQNLLRIFSMGGVGVGGGNGGQGFHSFEDGYPYASATPYMAGNGSSSSSYGFADE QSRSSGKAVVGWLKLKAALRWGIFIRKKAAERRAQLVELDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57580			Calmodulin-binding protein (.1...		Lus10011248 [exp]	0	1
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10019014 [exp]	1.0	0.8623
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Lus10030224 [exp]	2.0	0.8151
AT5G07360			Amidase family protein (.1.2)		Lus10043019 [exp]	2.2	0.8135
AT5G17680			disease resistance protein (TI...		Lus10011104 [exp]	2.4	0.8422
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031320 [exp]	3.5	0.8176
AT1G70740			Protein kinase superfamily pro...		Lus10001595 [exp]	8.7	0.7741
					Lus10028245 [exp]	8.8	0.7824
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10030472 [exp]	11.8	0.7939
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10028459 [exp]	14.5	0.8010
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10023838 [exp]	15.0	0.7984

Compare expression of checked genes

Lus10011248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.