Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21530 939 / 0 APC4 anaphase promoting complex 4, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 48 / 3e-05 TAF5 TBP-associated factor 5 (.1) AT4G33270 44 / 0.0003 AtCDC20.1, CDC20.1 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) AT4G33260 44 / 0.0003 AtCDC20.2, CDC20.2 cell division cycle 20.2, Transducin family protein / WD-40 repeat family protein (.1.2) AT4G29830 43 / 0.0007 VIP3 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 43 / 0.0008 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018436 [exp] 1387 / 0 AT4G21530 980 / 0.0 anaphase promoting complex 4, Transducin/WD40 repeat-like superfamily protein (.1) Lus10024447 [exp] 47 / 5e-05 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10007449 [exp] 47 / 7e-05 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G034900 [exp] 1045 / 0 AT4G21530 1077 / 0.0 anaphase promoting complex 4, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 49 / 8e-06 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G145800 [exp] 46 / 8e-05 AT4G29830 486 / 2e-174 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G048900 [exp] 45 / 0.0001 AT4G33270 766 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.006G263400 [exp] 45 / 0.0002 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.015G087200 [exp] 45 / 0.0002 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G056500 [exp] 45 / 0.0003 AT3G52030 475 / 1e-166 F-box family protein with WD40/YVTN repeat doamin (.1.2) Potri.019G021800 [exp] 44 / 0.0004 AT4G33270 767 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.005G144400 [exp] 43 / 0.0007 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.016G068700 [exp] 43 / 0.0009 AT4G33270 607 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10011250 pacid=23147123 polypeptide=Lus10011250 locus=Lus10011250.g ID=Lus10011250.BGIv1.0 annot-version=v1.0 ATGGAAATGGACGATGCTTCCGAGCACGTTGTCCCTTTCCAGCTCCAGTTCGATAAGCCCCTTGCTTCTCAGGTGAAAATCGCGGAGTGGAATCCGGAGA AGGATTTGTTGGCTATGGTTACCGATGACTCCAAAATCCTGCTCCATCGCTTCAATTGGCAGCGGCTATGGACGGTTTCTCCAGGCAAGTCAATTACGTC TCTGTGCTGGCGTCCTGATGGTAAAGCCATAGCGGTTGGTCTTGAAGATGGAACTATCTCATTGCACGATGTTGAGAGCGGAAAGTCGTTGAGAAGCCTG AAGTCTCATACTGCTCCGGTTGTGTGTCTTAACTGGGAAGAGGAGAGTGAGCTGGTTAGAGCCGTTTCTTTAACCTCTAATTGCTTGCTTTTTTTTCGGG TTGTGGAGTTTAAGATGGTCGTGGTAACTTACTCTCATATGAATTTATACATTTTTCAAGTTGAGTTTCAGAGTGATTCTGGGAATTCGTTAGTATATGA AGATCGCACTCCCCGTTTCTTTCCTCCAGCTCCAAGGGCGCCGCGAGTGGCTGGTGTTGTGACCAGCGATGCCAGCTTCATGGATGATAATGAAGATTCT TACAGGCAGCTCTCGAATTCGTCATACCAACGGTTTAACATTCTTTGCAGTGGAGATAAAGACGGGAGCATATGTTTCAGTATATTTGGAATATTTCCAA TAGGAAAAGTTAATATACACAAATTTCCTATACCAACGCCACAGATTGATAAGGTTGTGACTCGGCAGCTTGCTAATGCTTCCATATGCAAAGTTGCATT GTCAAAGGACCTATGTCAGTTGATTGTTCTCTTCTCTGGAGATCTTGTTGAAAGTACTGCTGCTGCTTCAGAATCAGATAAAATAGCCGGTCGCGGCATG CATGGCTTGGTGCTAGATACTTCTATATTTGGCAAGAGGAAGAACGAGCTCCATCAATTGGCCCAACAAGCTTCTAACATTGAAGACTTGACTGAGGTTA TCCGGTCGTCTTTGTCAGTGATGGTTAAACAATGGGCAGATGCTGTACATACATTCAGCCAGAAATTTGGTTCTCTGTCCACCCTGATTACCGATCATGG ACTGGACTCCTCTCCCCAGGAAGAGTTTCTGAGCCTTTTAGGCGGTGCTCGCACTAGTCCAGCAGTTCATCAATTTTTAGTGAATTCTCTTGGAGAAGCG GGTGTCAAACGTGTTTCGAAGACAGTCTCTGGTGGCGGAAAAGAACTTCAACGTGTGGTGCTTGACCATCTTCAGCCTGCTGCAGAAATAATTGCATTTA GGATGGGAGAACTTAGAGGTCTTTCAAGATGGCGCTCACGCTTCCAAGGTATAGGTCTGGATGAGAAACTTATTGCTGAAGCAACAGAAAAATCTGGCAT GATGCTTGTACAAGTTGAGCGATTCATGAGAGTGCTCACAACCGTTGAGCAACAGTTTTCCAATTTCTTTAACTGGCTTCTCAAATCTATAAAGTTGTTG ATGCAAGAACCAAATGATCAACTTCTACCATATAATAGTGAACTTCTTGTCATATTCCTAAAGTTCCTGTATGATCAAGATCCCGTTAGAAAGTTGCTGG ATCCCACTGAAGTCGATCACCCCGTTGAAGTTGACACGGAAACAATGCAAAGAGTCCAGGAGTTAGTTCAGTACGGTGGATTTTCAGACACAGAATATCT TCGTAGGACATTAGCCAAAGAGTTCGAACAAATGGAGTCAAGCTTCAAGGAGGCTTTTCTAATGCCATTCACCACAATCTCAAGAAAGATACATTTCATT GATTTGTTGCCTCTCTTTCCTCTACCGTCCTCACCAGCATCTAGATCTTCGACGATTCCCATGTCGATATCGTACTACGAGGATGCTTCTGAATCAAACG ACGATCCCTTTATGGATTACATCTGCTTTCAAGTTCCCAGCGAGTCCCTTCCCGTCGAAGGAAACTACGTTGGTATCTTACGAGGGTTTATGAACGACTT GAAGAATCTTAAGAAGGGATCTACTACCACTTTGGAAGGTGTGTTGCTTTCTATGCCCTCTGGCTACAGCTGCGCAGATCTGTCCTTATACAAGGACGGC CAAGTTGTTCTGCTACTAAACGGGACAACCAGCAGCCCTGAAGAATCATCCGGAGATGCTGCTGCCTGTATGACGATCGTGCAAGCTGACGATCTCTCAT TCATGCCGATCCCGAATTCCCTCCTAAGCCTCTGGAGAATGCATCACATTCAGGATTATGCTGTGTCCCTGGAGATAGAGAATGAAAAGTCTCGCAGCAT TCCTCATTCCGTCGTTGCTCCATTGGCTGTTAGCGGTAAAGTCTCTTACCTTACAAAGCCGTCAATCGGTCTCGTTTCGAATATTAAGCTTTCGAAGTTT CTGGTGTCTTTCTCTGACTTTGCAGCAACGAGGGGCGTGGCGTGTGTGTTTGCTGCGAGGAAGCGTGCTCTGGTGTACATATTGGAAGAAGATGAAGACG ACGTTCTTGAAACAGAAGCATGA
AA sequence Show only first row Show all	>Lus10011250 pacid=23147123 polypeptide=Lus10011250 locus=Lus10011250.g ID=Lus10011250.BGIv1.0 annot-version=v1.0 MEMDDASEHVVPFQLQFDKPLASQVKIAEWNPEKDLLAMVTDDSKILLHRFNWQRLWTVSPGKSITSLCWRPDGKAIAVGLEDGTISLHDVESGKSLRSL KSHTAPVVCLNWEEESELVRAVSLTSNCLLFFRVVEFKMVVVTYSHMNLYIFQVEFQSDSGNSLVYEDRTPRFFPPAPRAPRVAGVVTSDASFMDDNEDS YRQLSNSSYQRFNILCSGDKDGSICFSIFGIFPIGKVNIHKFPIPTPQIDKVVTRQLANASICKVALSKDLCQLIVLFSGDLVESTAAASESDKIAGRGM HGLVLDTSIFGKRKNELHQLAQQASNIEDLTEVIRSSLSVMVKQWADAVHTFSQKFGSLSTLITDHGLDSSPQEEFLSLLGGARTSPAVHQFLVNSLGEA GVKRVSKTVSGGGKELQRVVLDHLQPAAEIIAFRMGELRGLSRWRSRFQGIGLDEKLIAEATEKSGMMLVQVERFMRVLTTVEQQFSNFFNWLLKSIKLL MQEPNDQLLPYNSELLVIFLKFLYDQDPVRKLLDPTEVDHPVEVDTETMQRVQELVQYGGFSDTEYLRRTLAKEFEQMESSFKEAFLMPFTTISRKIHFI DLLPLFPLPSSPASRSSTIPMSISYYEDASESNDDPFMDYICFQVPSESLPVEGNYVGILRGFMNDLKNLKKGSTTTLEGVLLSMPSGYSCADLSLYKDG QVVLLLNGTTSSPEESSGDAAACMTIVQADDLSFMPIPNSLLSLWRMHHIQDYAVSLEIENEKSRSIPHSVVAPLAVSGKVSYLTKPSIGLVSNIKLSKF LVSFSDFAATRGVACVFAARKRALVYILEEDEDDVLETEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21530		APC4	anaphase promoting complex 4, ...		Lus10011250 [exp]	0	1
AT3G42660			transducin family protein / WD...		Lus10021720 [exp]	4.8	0.9453
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10043126 [exp]	8.5	0.9370
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10025389 [exp]	9.1	0.9425
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10008729 [exp]	12.7	0.9331
AT1G26330			DNA binding (.1.2)		Lus10000645 [exp]	13.1	0.9349
AT1G77320		MEI1	meiosis defective 1, transcrip...		Lus10000854 [exp]	13.9	0.9316
AT3G49400			Transducin/WD40 repeat-like su...		Lus10042218 [exp]	14.7	0.8557
AT5G16850		ATTERT	telomerase reverse transcripta...		Lus10026080 [exp]	15.5	0.9152
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10024822 [exp]	19.4	0.9337
AT4G36180			Leucine-rich receptor-like pro...		Lus10042177 [exp]	19.9	0.9253

Compare expression of checked genes

Lus10011250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.