Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54140 229 / 9e-78 TAF9, TAFII21 TBP-ASSOCIATED FACTOR 9, TATA binding protein associated factor 21kDa subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012411 [exp] 314 / 5e-111 AT1G54140 239 / 2e-81 TBP-ASSOCIATED FACTOR 9, TATA binding protein associated factor 21kDa subunit (.1) Lus10022103 [exp] 132 / 7e-41 AT1G54140 112 / 2e-33 TBP-ASSOCIATED FACTOR 9, TATA binding protein associated factor 21kDa subunit (.1) Lus10001863 [exp] 121 / 2e-36 AT1G54140 106 / 7e-31 TBP-ASSOCIATED FACTOR 9, TATA binding protein associated factor 21kDa subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G168300 [exp] 258 / 5e-89 AT1G54140 262 / 1e-90 TBP-ASSOCIATED FACTOR 9, TATA binding protein associated factor 21kDa subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF02291 [flax] [poplar] TFIID-31kDa Transcription initiation factor IID, 31kD subunit
Representative CDS sequence Show only first row Show all	>Lus10011251 pacid=23147088 polypeptide=Lus10011251 locus=Lus10011251.g ID=Lus10011251.BGIv1.0 annot-version=v1.0 ATGGCTGAAGGAGATGAGCAAATGCCAAGAGATGCGAAGATTGTCAAATCACTCTTGAAATCAATGGGTGTTGAAGACTACGAACCACGTGTTATCCACC AGTTCCTGGAGTTGTGGTATCGTTACGCTGTGGACGTGTTGACAGATGCTCAAGTTTACTCGGAGCATGCTGGCAAGTCTACTATCGACACTGAAGATGT CAAGCTTGCCATTCAATCCAAAGTAAACTTCAGCTTCTCACAGCCCCCACCAAGAGAGGTTTTGCTGGAGTTGGCGAGGAACAGGAACAAAATCCCATTG CCCAAGTCTGCCCCTGGACCGGGTACTCCTCTACCTCCGGATCAGGACACATTGATCAGTCCGAATTACCAATTAGCTATGCCAAGGAAACAGCTTTCCC AAGTAGAAGAGATGGAAGAGGATGAAGAAAGTGCTGCTGATCCGTGGAATCCCTTACAGGAACCAAATCCTGATACGCCCCAACAGCAGCAAACCCCTCA GAGAGTCTCGTTTCCTCTCGCCAAAAGGCCCAAGTGA
AA sequence Show only first row Show all	>Lus10011251 pacid=23147088 polypeptide=Lus10011251 locus=Lus10011251.g ID=Lus10011251.BGIv1.0 annot-version=v1.0 MAEGDEQMPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYAVDVLTDAQVYSEHAGKSTIDTEDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPL PKSAPGPGTPLPPDQDTLISPNYQLAMPRKQLSQVEEMEEDEESAADPWNPLQEPNPDTPQQQQTPQRVSFPLAKRPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10011251 [exp]	0	1
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10012833 [exp]	5.8	0.9356
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10003375 [exp]	10.4	0.9268
AT2G43770			Transducin/WD40 repeat-like su...		Lus10002860 [exp]	10.5	0.9355
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10034676 [exp]	12.6	0.9218
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10010429 [exp]	15.8	0.9354
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10023565 [exp]	16.7	0.9282
AT5G54970			unknown protein		Lus10032643 [exp]	16.7	0.9251
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10000946 [exp]	17.0	0.9287
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031844 [exp]	19.7	0.9173
AT1G27090			glycine-rich protein (.1)		Lus10037224 [exp]	24.1	0.9267

Compare expression of checked genes

Lus10011251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.