Plant FIBer expression Database

Lus10011252 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G54130 85 / 3e-19 AT-RSH3, RSH3, ATRSH3 RELA/SPOT homolog 3 (.1)
AT3G14050 79 / 2e-17 AT-RSH2, RSH2, ATRSH2 RELA-SPOT HOMOLOG 2, RELA/SPOT homolog 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022102
[exp]
139 / 7e-39 AT1G54130 801 / 0.0 RELA/SPOT homolog 3 (.1)
Lus10001862
[exp]
127 / 4e-34 AT1G54130 867 / 0.0 RELA/SPOT homolog 3 (.1)
Lus10037672
[exp]
82 / 3e-18 AT1G54130 891 / 0.0 RELA/SPOT homolog 3 (.1)
Lus10015656
[exp]
81 / 9e-18 AT1G54130 895 / 0.0 RELA/SPOT homolog 3 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G168200
[exp]
93 / 4e-22 AT1G54130 953 / 0.0 RELA/SPOT homolog 3 (.1)
Potri.003G066000
[exp]
88 / 2e-20 AT1G54130 901 / 0.0 RELA/SPOT homolog 3 (.1)
PFAM info
Representative CDS sequence
>Lus10011252 pacid=23147086 polypeptide=Lus10011252 locus=Lus10011252.g ID=Lus10011252.BGIv1.0 annot-version=v1.0
ATGCAGAATATTATGATAACACCATTGGGAAGGCTCAATGTGTTTTTTTTTGGGATAGGAGATATCAGGATAGCGCACCAACCTAAGCTAACGAAACAAT
CTAATCTAAAGGGGGAGAGAGCAGGGGAAGGGGAAAGAAAAGGGAAAGGGGAGGGAAGGGGAAGGAGAAGGGCAGGGAAGGGGAGGGGGTCAGAGAGCAG
CAACTCATTGCTGGTGAGATCCCAGGAAGGACAAATTGTGGAGTGGGGAAGAAGAAGATGTCAGTGCAATAGCTTCCAGCAAACTGGTGGAGTTAGCAAT
ACAAGTTCACCATACGGCTTCCTCAACACGAAGGATGACTCGAGGCTGAAACTTAACCATGTTCCTGTTAGTGATCCCAGCTGCAAGCTGAAGATGGGAG
ACTTGGTGGAGCTAAGCCCTGCAATTTCTGACAAATCACTAACTGAGTACAGGGAAGAGATTCAGCGTATGTACAACAGGGGGCTCATTGGCGTTTCAAG
CTTTCAGCTGTTCCCCCCCCCCAGCCACTGGAGTTGCGGTTTGTAG
AA sequence
>Lus10011252 pacid=23147086 polypeptide=Lus10011252 locus=Lus10011252.g ID=Lus10011252.BGIv1.0 annot-version=v1.0
MQNIMITPLGRLNVFFFGIGDIRIAHQPKLTKQSNLKGERAGEGERKGKGEGRGRRRAGKGRGSESSNSLLVRSQEGQIVEWGRRRCQCNSFQQTGGVSN
TSSPYGFLNTKDDSRLKLNHVPVSDPSCKLKMGDLVELSPAISDKSLTEYREEIQRMYNRGLIGVSSFQLFPPPSHWSCGL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G54130 AT-RSH3, RSH3, ... RELA/SPOT homolog 3 (.1) Lus10011252
[exp]
0 1
AT1G47550 SEC3A exocyst complex component sec3... Lus10001022
[exp]
1.7 1.0000
AT5G67440 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, M... Lus10025193
[exp]
2.8 1.0000
AT4G14130 XTR7, XTH15 xyloglucan endotransglycosylas... Lus10008888
[exp]
3.5 1.0000
Lus10009177
[exp]
4.0 1.0000
Lus10035026
[exp]
4.5 1.0000
AT2G25270 unknown protein Lus10014341
[exp]
5.7 0.8789
Lus10026785
[exp]
6.0 1.0000
AT5G49330 MYB PFG3, ATMYB111 PRODUCTION OF FLAVONOL GLYCOSI... Lus10000008
[exp]
6.9 1.0000
Lus10028048
[exp]
7.5 1.0000
AT5G38435 SPH8 S-protein homologue 8 (.1) Lus10029384
[exp]
7.7 1.0000

Lus10011252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.