Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21520 595 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 59 / 4e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 59 / 6e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G71840 57 / 1e-08 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 56 / 2e-08 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 56 / 4e-08 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G43770 55 / 5e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 55 / 8e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 53 / 2e-07 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT4G34460 53 / 2e-07 ELK4, AGB1, ATAGB1 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018434 [exp] 593 / 0 AT4G21520 357 / 2e-121 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002602 [exp] 91 / 2e-27 AT4G21520 59 / 8e-28 Transducin/WD40 repeat-like superfamily protein (.1) Lus10007449 [exp] 59 / 6e-09 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10041007 [exp] 56 / 3e-08 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10018458 [exp] 56 / 4e-08 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 56 / 4e-08 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 56 / 4e-08 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10014674 [exp] 56 / 4e-08 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 55 / 4e-08 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G043000 [exp] 622 / 0 AT4G21520 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G034600 [exp] 342 / 7e-117 AT4G21520 334 / 2e-114 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 61 / 3e-10 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 57 / 1e-08 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.006G045800 [exp] 56 / 3e-08 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.010G255400 [exp] 56 / 3e-08 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G115300 [exp] 55 / 5e-08 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.011G045500 [exp] 55 / 7e-08 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G002300 [exp] 54 / 1e-07 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 54 / 1e-07 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10011253 pacid=23147143 polypeptide=Lus10011253 locus=Lus10011253.g ID=Lus10011253.BGIv1.0 annot-version=v1.0 ATGGGAGAAGACAGCGCCGCCCAAGTAGACTCATCCGGTGACGAAGCTACCGGAACGTTCACGGAAATAGAAGCCGAGTCATCGGTTCTTGGAGAAACAC CGATCATCGGAGCTGCTGACGATCAGAGCTTCTCGTACTGGCCTTCGGTTCAGTTCGAAGTAGCTCCGCATAGAACGTACCATTTCTCTCAACAGTTCAG AGGCTCCACCGTCTCGAACAACTTCCTCAAAGGCGTCAAATGGTCGCCGGATGGCTCCTGCTTTCTTTCAAGCTCGGAGGACAATAAGCTTCGATTGTTT TCCCTACCAGATTATTATGATGGATGTGATGCATCTGCCTATGCTGCAGCTCCTGGTACAGATTCTTATGGTGCAAGCATGGTTGTGGATGAAGGGGAGC CTGTTTATGATTTCTGTTGGTATCCCTATATGGCCTCTTCAGACCCGGTGAGCTGTGTGTTCGCTACTACTACTCGCGACCATCCAATTCATCTATGGGA TGCTACTTCTGGCTCGGTCCGCTGCACATACCGTGCTTATGATGCTGTGGATGAGATCACTGCTGCCATTTCAGTTGCTTTTAATCCTGCTGGAACCAAG ATATATGCTGGATATAACAAGTGTATCAGGGTATTTAATGTGCATCGTCCTGGTAGAGATTTTGTACAGCATTCAACGGTCAAAGGAAACAAGGACGGAC AAACAGGAGTAATATCTTCCATTGCCTTTTCTCCAACTCATGGAGGGATGCTAGCCACCGGTTCATTCAGTCAGTCAACTGCTATATATAGAGAAGACAA CATGGAACTCTTGTATCTCCTTCATGGGCAAGAAGGTGGGATTACACATGTGCAATTCTCAAATGATGGAAACTATTTATATACCGGAGGCCGAAAGGAC CCATATATTATGTGCTGGGATGTCAGGAAAGCCGTGGAAGTTGTTTACAAGTTGTATAGATCTTCAGCACACACAAATCAGCGAATATATTTCGATGTAG ATCCCCATGGGCGGCATCTTGGCACTGGTGGTGAGGACGGCTTGGTTCACATCTACGATCTACAAACCGGGCAGTGGATATCGGGCTTTCAGGCTGCTGC AGACACAGTCAACGGCTTCGCCTTCCATCCTTCCCTGCCTATGGCTGTCTCTTCATCCGGCCACCGTAGATTCCAAGTCCCTGACGACGAAGATAACAGC TTCCAACTGGCCGATGACGAGAACTGTGTATCTGTTTGGAGCTTCTCGTGCAGAGGATCAGCAATCGAAACAGGGGACAGCGACGAAACTCTTGCTGCAT GA
AA sequence Show only first row Show all	>Lus10011253 pacid=23147143 polypeptide=Lus10011253 locus=Lus10011253.g ID=Lus10011253.BGIv1.0 annot-version=v1.0 MGEDSAAQVDSSGDEATGTFTEIEAESSVLGETPIIGAADDQSFSYWPSVQFEVAPHRTYHFSQQFRGSTVSNNFLKGVKWSPDGSCFLSSSEDNKLRLF SLPDYYDGCDASAYAAAPGTDSYGASMVVDEGEPVYDFCWYPYMASSDPVSCVFATTTRDHPIHLWDATSGSVRCTYRAYDAVDEITAAISVAFNPAGTK IYAGYNKCIRVFNVHRPGRDFVQHSTVKGNKDGQTGVISSIAFSPTHGGMLATGSFSQSTAIYREDNMELLYLLHGQEGGITHVQFSNDGNYLYTGGRKD PYIMCWDVRKAVEVVYKLYRSSAHTNQRIYFDVDPHGRHLGTGGEDGLVHIYDLQTGQWISGFQAAADTVNGFAFHPSLPMAVSSSGHRRFQVPDDEDNS FQLADDENCVSVWSFSCRGSAIETGDSDETLAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21520			Transducin/WD40 repeat-like su...		Lus10011253 [exp]	0	1
AT3G54470			uridine 5'-monophosphate synth...		Lus10024166 [exp]	3.9	0.9506
AT1G29370			Kinase-related protein of unkn...		Lus10015262 [exp]	5.5	0.9243
AT4G31810			ATP-dependent caseinolytic (Cl...		Lus10010685 [exp]	8.5	0.9406
AT3G54470			uridine 5'-monophosphate synth...		Lus10039539 [exp]	10.7	0.9429
AT3G02320			N2,N2-dimethylguanosine tRNA m...		Lus10020290 [exp]	11.6	0.9243
AT4G35890			winged-helix DNA-binding trans...		Lus10014254 [exp]	12.2	0.9334
AT5G44500			Small nuclear ribonucleoprotei...		Lus10013108 [exp]	16.5	0.9382
AT5G44500			Small nuclear ribonucleoprotei...		Lus10003498 [exp]	17.5	0.9356
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10009186 [exp]	19.4	0.9151
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Lus10004628 [exp]	25.8	0.9293

Compare expression of checked genes

Lus10011253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.