Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61330 84 / 5e-17 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT1G61320 77 / 9e-15 FBD / Leucine Rich Repeat domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010664 [exp] 431 / 3e-146 AT1G61320 125 / 6e-31 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10034733 [exp] 388 / 2e-129 AT1G61320 110 / 5e-26 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10011971 [exp] 365 / 2e-119 AT1G61320 103 / 2e-23 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10033364 [exp] 127 / 1e-31 AT4G38540 84 / 4e-34 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10042721 [exp] 126 / 1e-30 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10018433 [exp] 416 / 7e-29 AT1G61330 109 / 2e-25 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10029682 [exp] 104 / 7e-27 ND / Lus10000273 [exp] 84 / 3e-19 ND / Lus10034814 [exp] 82 / 9e-19 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G042900 [exp] 105 / 6e-24 AT1G61330 226 / 2e-68 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.004G034500 [exp] 102 / 6e-23 AT1G61330 175 / 3e-49 FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08387 [flax] [poplar] FBD FBD
Representative CDS sequence Show only first row Show all	>Lus10011254 pacid=23147128 polypeptide=Lus10011254 locus=Lus10011254.g ID=Lus10011254.BGIv1.0 annot-version=v1.0 ATGGCTAACAATGTTGAACTTAACGGATCCATCACTGGTCCCGTTGAAACAACAGAGTTTAGTTCGATGCAGTTGGCTCCTACACGCCATCGAAGTGGAG CATCTAGTTCAAAAGCTAGGAAAGAATACAATAACTTCTTATCATTGCCGAATGATATACTCAAAGAGATCTGGGGCTTTCTCGATATGAAACAACTAGT CCGATTGGGCGTCGTAGCCAAGCAATTCAGAGTGACACCTGATCTCATATTTGAGATCAAGACACTTGAGACCCTCCGTATGGTGTACATCGATGTAGGG TCACCAAATAACGAATTCCTAATCACCGGGCTAAGATTTCTCAAGATCTGCTCGATGAAGAAGGTAAACCTCGAAGGGGCCCTGCTCGATGTCGTTCTGA AAAGCTGCACGGAGCTCGAGATTCTCGAGATCATCAAGTGCGACACTCCCCCTCACGTCAAATTTTCTGCTGGAAGTTTGCAAAAGTTCAAAAAGTTAAG ACTCGCCAGCTGCATGGATCTTGATGAGATCACCCTCAATGCGCCCTCCCTCATCACCCTGCATTATTCGGGCCAACCCATTGTGTTTAACACCGAAAAC TGCGGGAATTTCGTCGATTTCCTGATCGACTTTCAGTCCACAAGATGGGCATATTTATATATTAACCACTTACTGATGGAGATGCTGATGGTGATCATCC AAAGAATCGAGGTCTTGACCATTACCAATGTGTTCGTAGAGAGATTGTGCGCGAAACTCGTGGATGCGGAAGCAAGGAATTTGTTCTGCTATTTCCCAAT GGTGAAAGAAATCAACTTGACCCTGAAAGAATCAACGCACTACAGTTTGTTCACGATTGCGTATTTCCTTAGCAAATTTCCTTGTTGTGAGAGGATTTTT ATTAATGTCCGCCGTTGGCTTCAGGACATGCCACTGGCACCGTTGGAACTCTATGTGAGAGGCGTATTTGCGAGAGCAAGCAGCGTTGTTGTGGACCAAG CCGCCGAGCAGCAACTACCATGGATACAACTGACCGAAGCGTCGATCGCCCTAGCCAATCGGGTGCTAGGCGCGAGCTACCTACATTTGGAGCAGGTGAA ACTAATTGGTTTCCGGTTCAAGCCCGATGAGATGGAGTTGCTAGGCTACTTCCTTCGAACCGCGCCCAACTTAAAGACGATGGCAATCTTCACGGCCTCG CCACGCCACTGGGTGCCGCATGTGCCTGAGGAGCCCATGTTCACCTCCATCCTTCGAACGAGCCGGATAGTCATCTCTCCCGATGTACAAATTGAGATAT TTCAGCACAAACAAGAGAAAAAGCTCTATCCTGCTACGCACCCAAAAAATTGGCGTACGGATCTATCCTCCCCGAACATGCTGCCGTCGCTTCTCGTATT CATTTCTCCTTCCGCCGCCGCTTATCAGAAGCTCTCCGGATCTCCGGCGGTCTCTGTCGCAGCTGATGGATTAATCCGCCACACAATCCCGATGTGGGCC TCTAATTACAGAATTTCAGATCTCTCCTCCCCGAAGATGCTGCCGTTGAGAATTCCTTACCCCTTCTACCGCCCGGAAGCTCTCCGGATCTCCAGTGTTC TCTGCCGCTGA
AA sequence Show only first row Show all	>Lus10011254 pacid=23147128 polypeptide=Lus10011254 locus=Lus10011254.g ID=Lus10011254.BGIv1.0 annot-version=v1.0 MANNVELNGSITGPVETTEFSSMQLAPTRHRSGASSSKARKEYNNFLSLPNDILKEIWGFLDMKQLVRLGVVAKQFRVTPDLIFEIKTLETLRMVYIDVG SPNNEFLITGLRFLKICSMKKVNLEGALLDVVLKSCTELEILEIIKCDTPPHVKFSAGSLQKFKKLRLASCMDLDEITLNAPSLITLHYSGQPIVFNTEN CGNFVDFLIDFQSTRWAYLYINHLLMEMLMVIIQRIEVLTITNVFVERLCAKLVDAEARNLFCYFPMVKEINLTLKESTHYSLFTIAYFLSKFPCCERIF INVRRWLQDMPLAPLELYVRGVFARASSVVVDQAAEQQLPWIQLTEASIALANRVLGASYLHLEQVKLIGFRFKPDEMELLGYFLRTAPNLKTMAIFTAS PRHWVPHVPEEPMFTSILRTSRIVISPDVQIEIFQHKQEKKLYPATHPKNWRTDLSSPNMLPSLLVFISPSAAAYQKLSGSPAVSVAADGLIRHTIPMWA SNYRISDLSSPKMLPLRIPYPFYRPEALRISSVLCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10011254 [exp]	0	1
AT4G17770		ATTPS5	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10019982 [exp]	4.2	0.8725
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10009890 [exp]	7.7	0.8597
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10022546 [exp]	9.4	0.8588
AT1G77210		AtSTP14	sugar transport protein 14, su...		Lus10009714 [exp]	19.0	0.8481
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Lus10009367 [exp]	19.6	0.8412
AT5G05140			Transcription elongation facto...		Lus10039000 [exp]	22.0	0.8544
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10016634 [exp]	27.7	0.7581
AT3G61800			unknown protein		Lus10004000 [exp]	28.7	0.8512
AT5G06560			Protein of unknown function, D...		Lus10029342 [exp]	30.4	0.8144
AT5G25770			alpha/beta-Hydrolases superfam...		Lus10011694 [exp]	31.2	0.7855

Compare expression of checked genes

Lus10011254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.