Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21510 105 / 2e-28 F-box family protein (.1) AT1G61340 83 / 4e-20 F-box family protein (.1.2) AT4G05010 61 / 1e-11 F-box family protein (.1) AT4G35930 53 / 2e-08 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018432 [exp] 320 / 3e-113 AT4G21510 102 / 3e-27 F-box family protein (.1) Lus10022370 [exp] 78 / 1e-18 AT4G21510 67 / 1e-14 F-box family protein (.1) Lus10028422 [exp] 54 / 1e-08 AT4G35930 267 / 3e-89 F-box family protein (.1) Lus10041876 [exp] 53 / 3e-08 AT4G35930 265 / 3e-88 F-box family protein (.1) Lus10025956 [exp] 52 / 6e-08 AT4G35930 301 / 2e-102 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G034400 [exp] 129 / 8e-38 AT1G61340 127 / 2e-37 F-box family protein (.1.2) Potri.011G042800 [exp] 126 / 1e-36 AT4G21510 115 / 4e-32 F-box family protein (.1) Potri.005G110200 [exp] 55 / 4e-09 AT4G35930 332 / 4e-114 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011255 pacid=23147116 polypeptide=Lus10011255 locus=Lus10011255.g ID=Lus10011255.BGIv1.0 annot-version=v1.0 ATGGCGTTGGGAAGGAGTTGCAGCAGCTCAATGATGGAAACGGACCAAGCTCCGTTTGAGTTGGTGAGGTACAGTTCTTTTGGAAGGAAGAGGATCACCG TCTCCCCGAGTCTCGAGCCTTGGGATATGGAGACTGGTCCTGTAACTCCGCTGAAGAGGCATTGCAGTGGAGTAACAATGGCTGCTGCTTTAGCAGCAGA CGCAGCAGAGCTCGAAAGCTTGCCCCAAGAGCTTCTGGTTAGAGTAATCTGTGGAGTGAATCATGAAGATCTGAAGCAGCTTCTCCTTGTCTCGAAACCA ATCGCTGAAGCTACTTCAATAGCTAGAGAAATCCACTTTGCCTACAACACCCCGAAGAAAGTCCGAGCCTTTCGATCTCCACTAGTCGATTTCTCCTCTC TGGAAGTCAACGAGATCGAAACGCCTCGAGCTCCCAGGGCAGTAAGGGAGTACAAGCTGTTGAGCAAGAAGGTGGCTTCGGACCTGTCGGTTTCGCTCTT CTCTTCGCCTGAGCCGAAGAGGAAAGGATCTCTGTTCACCGACATGGAGATCGACGACGACATATGA
AA sequence Show only first row Show all	>Lus10011255 pacid=23147116 polypeptide=Lus10011255 locus=Lus10011255.g ID=Lus10011255.BGIv1.0 annot-version=v1.0 MALGRSCSSSMMETDQAPFELVRYSSFGRKRITVSPSLEPWDMETGPVTPLKRHCSGVTMAAALAADAAELESLPQELLVRVICGVNHEDLKQLLLVSKP IAEATSIAREIHFAYNTPKKVRAFRSPLVDFSSLEVNEIETPRAPRAVREYKLLSKKVASDLSVSLFSSPEPKRKGSLFTDMEIDDDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21510			F-box family protein (.1)		Lus10011255 [exp]	0	1
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10018142 [exp]	3.5	0.9267
					Lus10023874 [exp]	6.5	0.8861
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10040031 [exp]	7.5	0.8837
AT2G41480			Peroxidase superfamily protein...		Lus10020421 [exp]	9.2	0.8712
AT3G07350			Protein of unknown function (D...		Lus10003174 [exp]	10.4	0.8395
AT3G23880			F-box and associated interacti...		Lus10036065 [exp]	11.6	0.8802
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Lus10037075 [exp]	12.7	0.8933
AT4G00720		ASKTHETA, ATSK3...	SHAGGY-LIKE PROTEIN KINASE THE...		Lus10018850 [exp]	13.4	0.8898
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10002936 [exp]	13.9	0.8586
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10002697 [exp]	14.4	0.9021

Compare expression of checked genes

Lus10011255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.