Plant FIBer expression Database

Lus10011256 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018431
[exp]
228 / 3e-75 AT4G21500 68 / 1e-13 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G034200
[exp]
70 / 6e-14 AT4G21500 80 / 7e-18 unknown protein
Potri.011G042600
[exp]
60 / 2e-10 AT4G21500 77 / 1e-16 unknown protein
PFAM info
Representative CDS sequence
>Lus10011256 pacid=23147094 polypeptide=Lus10011256 locus=Lus10011256.g ID=Lus10011256.BGIv1.0 annot-version=v1.0
ATGAACCAAAGTGAGATGATGAATCCATGGGGATTAATATCTCTGAAACCCATTTCACTCTTCTTCATAATGTCATCATCAACTTCTTCCTCCTCCGATC
CTCTCTTCTCCTTCGTCGCAGCTCTCTACGCGCTGATCCTACTCTACTTCCCCGGCGGCGCCCTCTGTTTCTCTCCGGCGGTGATACTCCTCACCGCAAT
CGCCTTACTCTGCATCCTCCGCCTCGGCGCCCTCCAAGAAACCACCGAACCCACCACCACAACCGCTGGGTCTACAATCACCGAAGCCCACAAGCCCAAC
GACGGTGCCGTGAAGTCCGACTCCCTGACCCGACCCGACCCGGATTGCTTCTCCTCGTTCGTCCAGTGGGACGTCGGAGCTCCGTTGGAGGTTATCTACG
AGGAAGGGGAAGATCATTTCCCTCCTCAATTCGATCTCGAGGATCGAATTGAGGGAACTGGGGATGGGATTATGAGGAGGTGCCCGTCGCTGTCGATGTA
CTACCCGGAGTCCGACGACTCTGATTCGTCGGACGACGGAGGCGAATTCTGCGGCGGCGGATTCCGGTGGGAGGAGGAGGACAGAGAAGGGATGTTGATC
GAGATTGATTTGGATCATCGTAAGAATAAGGGTTTTGATCGGTTGGGGTTTTGCGGCGAGGAAGAGAATATGATTGAGATTGATATCTCGCCGGGGAAGC
TCGACGACGTGTTCTCCGGCGAAGTGTGTTATTATTGA
AA sequence
>Lus10011256 pacid=23147094 polypeptide=Lus10011256 locus=Lus10011256.g ID=Lus10011256.BGIv1.0 annot-version=v1.0
MNQSEMMNPWGLISLKPISLFFIMSSSTSSSSDPLFSFVAALYALILLYFPGGALCFSPAVILLTAIALLCILRLGALQETTEPTTTTAGSTITEAHKPN
DGAVKSDSLTRPDPDCFSSFVQWDVGAPLEVIYEEGEDHFPPQFDLEDRIEGTGDGIMRRCPSLSMYYPESDDSDSSDDGGEFCGGGFRWEEEDREGMLI
EIDLDHRKNKGFDRLGFCGEEENMIEIDISPGKLDDVFSGEVCYY

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G21500 unknown protein Lus10011256
[exp]
0 1
AT3G60160 ATMRP9, ABCC9 ATP-binding cassette C9, multi... Lus10042023
[exp]
1.0 0.8800
AT5G02750 SGR9 SHOOT GRAVITROPISM 9, RING/U-b... Lus10015046
[exp]
2.0 0.8789
AT4G21500 unknown protein Lus10018431
[exp]
3.9 0.8396
AT4G11350 Protein of unknown function (D... Lus10036382
[exp]
4.6 0.8754
AT5G02750 SGR9 SHOOT GRAVITROPISM 9, RING/U-b... Lus10003992
[exp]
6.6 0.8731
AT5G42680 Protein of unknown function, D... Lus10021759
[exp]
6.9 0.8595
Lus10018215
[exp]
7.1 0.8725
AT1G52190 Major facilitator superfamily ... Lus10025802
[exp]
8.5 0.8695
AT5G08580 Calcium-binding EF hand family... Lus10010165
[exp]
9.4 0.7923
AT4G08150 HD BP1, KNAT1 BREVIPEDICELLUS 1, BREVIPEDICE... Lus10028244
[exp]
10.6 0.8389

Lus10011256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.