Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11920 503 / 6e-179 Pectin lyase-like superfamily protein (.1) AT4G22080 503 / 1e-178 RHS14 root hair specific 14 (.1) AT4G22090 494 / 3e-175 Pectin lyase-like superfamily protein (.1) AT1G30350 413 / 2e-143 Pectin lyase-like superfamily protein (.1) AT3G07010 397 / 2e-136 Pectin lyase-like superfamily protein (.1) AT3G27400 397 / 2e-136 Pectin lyase-like superfamily protein (.1) AT3G24230 396 / 1e-135 Pectate lyase family protein (.1) AT4G13710 393 / 3e-134 Pectin lyase-like superfamily protein (.1.2) AT5G48900 391 / 3e-134 Pectin lyase-like superfamily protein (.1) AT5G63180 387 / 1e-132 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018430 [exp] 744 / 0 AT1G11920 525 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011258 [exp] 644 / 0 AT1G11920 549 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10018429 [exp] 478 / 2e-167 AT1G11920 437 / 8e-152 Pectin lyase-like superfamily protein (.1) Lus10014887 [exp] 399 / 1e-137 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022817 [exp] 398 / 1e-136 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022310 [exp] 397 / 1e-136 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011885 [exp] 397 / 2e-136 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 388 / 1e-132 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10006456 [exp] 384 / 1e-131 AT1G67750 625 / 0.0 Pectate lyase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G008000 [exp] 540 / 0 AT4G22080 540 / 0.0 root hair specific 14 (.1) Potri.004G007300 [exp] 517 / 0 AT4G22080 489 / 1e-173 root hair specific 14 (.1) Potri.011G008100 [exp] 499 / 6e-177 AT4G22080 504 / 2e-179 root hair specific 14 (.1) Potri.010G051800 [exp] 390 / 2e-133 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.001G339500 [exp] 389 / 2e-133 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G182200 [exp] 389 / 2e-133 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.002G238800 [exp] 385 / 1e-131 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G178100 [exp] 383 / 1e-130 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G175900 [exp] 382 / 3e-130 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 381 / 9e-130 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10011257 pacid=23147158 polypeptide=Lus10011257 locus=Lus10011257.g ID=Lus10011257.BGIv1.0 annot-version=v1.0 ATGGGATTCTCATCCTCAATCTTCCTCTTAACGATCTCATTTCATCTTCTACTAACCCACGATCCGACAACCAATGTCCTCGTGGCTTTCGCGCTTGACT ACTACAACTACAAGCCCCGTCTGAAAGGCCATCCCAATCATCATCTCTATGCCGACGCGACCTCCAAGTTGTTGTTGAACCCGATCGACTCCTGCTGGCG CAGGAGTCGAAGTTGGGCAACAAACAGGCGCTCTCTAGCGAATTGCACTGTAGGGTTTGGGGAGGCCACAGAGGGAGGAAAGAACGGTTCGATCTATGTT GTGAAGACCGGCGGGGATGAAGACCCTGCAGACCCCAAGCCGGGAACCCTCCGGTACGGAGCCATCCAGACGAAGCCGCTTTGGATCGTGTTTGAGGAGG ACATGGTGATCACGCTGAAGAACGAGCTGATGGTGAATAGCTACAAGACGATTGACGGGAGGGGCGCCAGGGTGGAGATCGCCTACGGACCGTGCATAAC GATCCAAGGCGTGAGCCACGTGATCGTGCACGGGATCAGCATTCACCACTGCAAGCCCGGGAAGCCCGGGCTTGTCAGGATTAGCCCGAGCCATGTCGGT AGAAGACTGGGCTCAGACGGGGATGCCATTGCTATATTTGGATCCTCGAATGTGTGGATCGACCATTGCTACTTGGCTCGGAGCACGGATGGGCTCATCG ACATCATCCATGCTTCTACGTACATCACAATCTCTAACAACTATTTCACCCAACATGATAAGGTGATGTTGATCGGACACAATGACACTTACAAAGAAGA CAAAGTAATGAAAATAACCATAGCATTTAACCATTTTGGAGCTGGATGTATTGAAAGAATGCCAAGGGTGAGATTTGGGTATGCACATGTTGTGAATAAT AGGTATGATGAGTGGCAAATGTATGCAATTGGAGGCAGTGCTAATCCGACAATATTCAGCGAGGGAAATTACTTCATTGCCCCCAATAATCCGTCGGCCA AACAGGTGACAAAGAGGCAGGCCAGGGGTGGATGGAAGCAGTGGAAGTGGCGATCGTCGGGGGATGTTTTCGAAAACGGTGCCTACTTCATAGAGTCAGG ACACGGACAATGTACTCCCCCGTACACTCGCTCGCAATCCTTCAATGTTGCAGACGGTGCTATGACTCCGGCTCTGACCTCTGCCGCGGGCCCACTCTCT TGCTCTTGGGGAAAACCCTGCTGA
AA sequence Show only first row Show all	>Lus10011257 pacid=23147158 polypeptide=Lus10011257 locus=Lus10011257.g ID=Lus10011257.BGIv1.0 annot-version=v1.0 MGFSSSIFLLTISFHLLLTHDPTTNVLVAFALDYYNYKPRLKGHPNHHLYADATSKLLLNPIDSCWRRSRSWATNRRSLANCTVGFGEATEGGKNGSIYV VKTGGDEDPADPKPGTLRYGAIQTKPLWIVFEEDMVITLKNELMVNSYKTIDGRGARVEIAYGPCITIQGVSHVIVHGISIHHCKPGKPGLVRISPSHVG RRLGSDGDAIAIFGSSNVWIDHCYLARSTDGLIDIIHASTYITISNNYFTQHDKVMLIGHNDTYKEDKVMKITIAFNHFGAGCIERMPRVRFGYAHVVNN RYDEWQMYAIGGSANPTIFSEGNYFIAPNNPSAKQVTKRQARGGWKQWKWRSSGDVFENGAYFIESGHGQCTPPYTRSQSFNVADGAMTPALTSAAGPLS CSWGKPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11920			Pectin lyase-like superfamily ...		Lus10011257 [exp]	0	1
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006183 [exp]	1.0	0.8513
AT1G02810			Plant invertase/pectin methyle...		Lus10029866 [exp]	7.5	0.7603
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10038536 [exp]	8.0	0.8428
					Lus10004843 [exp]	13.2	0.8029
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10014420 [exp]	15.4	0.8157
AT5G47530			Auxin-responsive family protei...		Lus10017564 [exp]	16.2	0.8354
AT2G31081		CLE4	CLAVATA3/ESR-RELATED 4 (.1)		Lus10015304 [exp]	20.4	0.7724
AT5G57280		RID2	root initiation defective 2, S...		Lus10015533 [exp]	21.2	0.7867
AT5G42905			Polynucleotidyl transferase, r...		Lus10006008 [exp]	23.5	0.7451
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10035547 [exp]	23.5	0.7489

Compare expression of checked genes

Lus10011257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.