Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22080 536 / 0 RHS14 root hair specific 14 (.1) AT1G11920 530 / 0 Pectin lyase-like superfamily protein (.1) AT4G22090 528 / 0 Pectin lyase-like superfamily protein (.1) AT1G30350 429 / 9e-150 Pectin lyase-like superfamily protein (.1) AT4G13710 409 / 2e-140 Pectin lyase-like superfamily protein (.1.2) AT3G07010 406 / 3e-140 Pectin lyase-like superfamily protein (.1) AT1G67750 405 / 7e-140 Pectate lyase family protein (.1) AT3G24230 399 / 6e-137 Pectate lyase family protein (.1) AT3G27400 397 / 9e-137 Pectin lyase-like superfamily protein (.1) AT1G04680 394 / 5e-135 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011257 [exp] 671 / 0 AT1G11920 530 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10018430 [exp] 663 / 0 AT1G11920 525 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10018429 [exp] 573 / 0 AT1G11920 437 / 8e-152 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 409 / 9e-141 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011885 [exp] 405 / 3e-139 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022817 [exp] 404 / 4e-139 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10036946 [exp] 403 / 5e-139 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011400 [exp] 400 / 1e-137 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10014887 [exp] 399 / 2e-137 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G008000 [exp] 560 / 0 AT4G22080 540 / 0.0 root hair specific 14 (.1) Potri.004G007300 [exp] 537 / 0 AT4G22080 489 / 1e-173 root hair specific 14 (.1) Potri.011G008100 [exp] 536 / 0 AT4G22080 504 / 2e-179 root hair specific 14 (.1) Potri.008G148800 [exp] 405 / 2e-139 AT5G15110 523 / 0.0 Pectate lyase family protein (.1) Potri.015G087800 [exp] 399 / 2e-137 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 397 / 1e-136 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G339500 [exp] 394 / 1e-135 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.002G238800 [exp] 388 / 9e-133 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G182200 [exp] 385 / 3e-132 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.010G051800 [exp] 384 / 2e-131 AT1G67750 645 / 0.0 Pectate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10011258 pacid=23147164 polypeptide=Lus10011258 locus=Lus10011258.g ID=Lus10011258.BGIv1.0 annot-version=v1.0 ATGGGATTGTTCTCCGTCGTCCTCTTGACGGTGTCGTTCCATCTTCTACTAACTCACGATCTACACGCCAATGTCGCTGCCTCACTGGACTACTATAACT ACAAGCCTGGTATAAGTGATCATCCCGATCTCTCTATAAGCACAACCTCTAATTATAACAAGTTGTTGCTAAACCCAGTTGACTCATGTTGGCGTAGGAG TCAAAACTGGGCGACCCACCGTCAGTCTTTGGCAGACTGTGTGGTTGGTTTTGGGCAGGCCACTGTAGGAGGAAAGTACGGTTCGATCTACGTGGTGAAA ACAGGAGGCGATGATGACCCTGCAGACCCCAAGCCGGGAACCCTCCGCTACGGAGCCATCCAGGCAGAGCCGCTCTGGATCGTATTTGCAAAAGACATGG TGATCACTCTGAAGAAGGAGCTGATGGTGAACAGCTACAAGACCATCGACGGGAGGGGTGCCAAGGTGGAGATTGCCTACGGACCGTGCATCACGATCCA GGGCGTGACACATGTTATAGTGCATGGGATCAGCATCCATCACTGCAAGCCCGGGACGCCCGGGCTTGTCAGGAATAGCCCGAGCCATGTTGGCAGACGA CTGGGCTCGGACGGGGATGCCATTGCCATATTTGCATCCTCGAACGTGTGGATCGACCATTGCTACCTGGCTCGGTGTGCAGACGGGCTCATCGACATCA TCCATGCTTCTACTTCTATCACCATCTCTAACAACTATTTCACCCAACATGATAAGGTTATGCTAATTGGACACAATGACAATAACAAGGAAGACAAAGT TATGAAGATAACAATTGCATTCAACCATTTTGGAGTTGGTTGTATTGAAAGAATGCCCAGGGTGAGGTTTGGGTATGCTCATGTTGTGAACAATAGATAC GATGAGTGGCAAATGTATGCAATTGGAGGCAGTGCTAATCCCACCATATTCAGCCAGGGAAATTACTTCATTGCCCCCAATAAACCATCTGCCAAACAGG TGACAAAGAGGGAGGTGAAGAGTGGATGGAAGCAATGGAAGTGGAGGTCGTCGGGGGATGTTTTCGAGAACGGTGCCTACTTTGTACAATCGGGCTACGG AACATGTACTCCCCCGTACACTCGCTCACAATCTTTTAAGGTTGCCCCCGGTGCTTTGGCTCCTACTCTAACTTCTTCCGCCGGCCCGCTCTCCTGCTCT CCCGGCAAACCCTGCTGA
AA sequence Show only first row Show all	>Lus10011258 pacid=23147164 polypeptide=Lus10011258 locus=Lus10011258.g ID=Lus10011258.BGIv1.0 annot-version=v1.0 MGLFSVVLLTVSFHLLLTHDLHANVAASLDYYNYKPGISDHPDLSISTTSNYNKLLLNPVDSCWRRSQNWATHRQSLADCVVGFGQATVGGKYGSIYVVK TGGDDDPADPKPGTLRYGAIQAEPLWIVFAKDMVITLKKELMVNSYKTIDGRGAKVEIAYGPCITIQGVTHVIVHGISIHHCKPGTPGLVRNSPSHVGRR LGSDGDAIAIFASSNVWIDHCYLARCADGLIDIIHASTSITISNNYFTQHDKVMLIGHNDNNKEDKVMKITIAFNHFGVGCIERMPRVRFGYAHVVNNRY DEWQMYAIGGSANPTIFSQGNYFIAPNKPSAKQVTKREVKSGWKQWKWRSSGDVFENGAYFVQSGYGTCTPPYTRSQSFKVAPGALAPTLTSSAGPLSCS PGKPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11920			Pectin lyase-like superfamily ...		Lus10011258 [exp]	0	1
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10004859 [exp]	3.5	0.8878
AT3G07840			Pectin lyase-like superfamily ...		Lus10009605 [exp]	3.6	0.8297
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10024478 [exp]	4.2	0.8749
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10033399 [exp]	5.3	0.8877
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10040948 [exp]	7.7	0.8743
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10013419 [exp]	8.4	0.8731
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10014137 [exp]	8.4	0.8564
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10041926 [exp]	8.8	0.8629
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10006711 [exp]	9.9	0.8540
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10034859 [exp]	11.0	0.7349

Compare expression of checked genes

Lus10011258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.