Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05020 886 / 0 NDB2 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) AT4G21490 872 / 0 NDB3 NAD(P)H dehydrogenase B3 (.1) AT2G20800 768 / 0 NDB4 NAD(P)H dehydrogenase B4 (.1) AT4G28220 723 / 0 NDB1 NAD(P)H dehydrogenase B1 (.1) AT2G29990 209 / 1e-60 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT1G07180 207 / 1e-59 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) AT3G44190 59 / 3e-09 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G08740 57 / 3e-08 NDC1 NAD(P)H dehydrogenase C1 (.1) AT5G22140 53 / 3e-07 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G03630 49 / 7e-06 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006737 [exp] 1036 / 0 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10020087 [exp] 1035 / 0 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10018427 [exp] 1026 / 0 AT4G05020 797 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10002599 [exp] 776 / 0 AT4G05020 630 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10018541 [exp] 741 / 0 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10002601 [exp] 741 / 0 AT4G05020 609 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10039768 [exp] 697 / 0 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1) Lus10018540 [exp] 696 / 0 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1) Lus10039769 [exp] 691 / 0 AT4G28220 770 / 0.0 NAD(P)H dehydrogenase B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G034100 [exp] 925 / 0 AT4G05020 890 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Potri.011G042500 [exp] 902 / 0 AT4G21490 869 / 0.0 NAD(P)H dehydrogenase B3 (.1) Potri.013G147300 [exp] 781 / 0 AT2G20800 801 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.013G147400 [exp] 779 / 0 AT2G20800 827 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.013G147200 [exp] 768 / 0 AT4G28220 852 / 0.0 NAD(P)H dehydrogenase B1 (.1) Potri.004G036300 [exp] 249 / 2e-75 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.011G044600 [exp] 248 / 7e-75 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Potri.009G047100 [exp] 211 / 2e-61 AT2G29990 757 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.001G217800 [exp] 67 / 1e-11 AT3G44190 536 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.007G098700 [exp] 58 / 1e-08 AT5G08740 710 / 0.0 NAD(P)H dehydrogenase C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10011259 pacid=23147153 polypeptide=Lus10011259 locus=Lus10011259.g ID=Lus10011259.BGIv1.0 annot-version=v1.0 ATGAAAGCGATGGCGGTGTTTCAGAGAGCTTCGAGGACGTTTCATGACAGTTCGTCGCTGTCGAAGCTGCTCGTCGTCTTCACCGTAAGTGGTGGAGGCC TCGTGGCTTATGCGGACGCAAACTCACCGACTCCTGTTGCTCCGCCTCAGATCAAGAAGAAGAAAGTGGTTGTGCTTGGAACTGGCTGGGCAGGGACAAG TTTCTTGAAGCAATTGAACGATCCGTCGTACGAGGTTCAAGTGATATCGCCGCGGAATTACTTTGCATTCACTCCTCTGTTACCTAGTGTTACCGTTGGT ACAGTCGAACCTCGCAGCATCGTGGAGCCAATCCGTAATATCGTCAAGAAGAAAAACGTTGACGTCATTTACTCGGAAGCTGAATGTTTCAAGATCGATT CCCAGAGCAAGAAGGTTCACTGCCGTTCTACTCAGGACGTCAATGGACACGGCAAGGAAGAATTCGAAGTGGAATACGACTACCTTGTCGTAGCAATGGG AGGGCGTCCCAACACTTTCAACACTCCTGGTGTAGTGGAACATTGCAACTTTCTAAAGGAGGTGGAAGATGCTCAGAAGATCCGGAGGTCTGTTGTGGAT GCTTTTGAGAAGGCCAGCCTGCCAAGCTTGACCGATGAAGAGCGGACGAAAATGCTGCATTTCGTGGTAGTCGGTGGTGGCCCTACAGGGGTGGAGTTTG CTGCAGAGCTTCATGATTTCGTGACTGAGGATCTAGTGAGATTGTACCCTGCTGCTGGAAAATATGTCAAGATAACACTGCTCGAGGCTGCTGATCATAT CCTAACAATGTTTGACAAGCGAATCACGGAATTTGCAGAGGACAAGTTCAAAAGAGACGGCATAGATGTGAAACTAGGCTCAATGGTTACCAAAGTAACT GATAAGGAAATCTGTGCTAAAGCTAGAGTCAATGGGCAAGTTACTAACATACCTTATGGAATGGTGGTTTGGTCAACTGGAATCGGAGTTCATCCTGTTA TTAGAGATTTCATGAAGGAAGTTAATCAGGGAAACAGACGTGCTTTAGCTACTGATGAATGGCTCCGAGTTGAAGGAACTGATAACGTATACGCTCTTGG CGACTGTGCTACTATTAACCAGCGGAAAGTCATGGAAGATATAACAGCAATATTCAAGAAGGCAGACAAGGACAACTCTGGTACACTTACTGTAAAAGAA CTCCAAGAAGCAATTGACGACATCTGCGAAAGGTACCCTCAAGTGGATCTCTATCTAAAGACGAAGAAGCTCCGCAACATCGCTGACCTCCTCAAGGCTG CGAAAGGTGACGATGCAAAGGGCTCGATCGAACTCAGCATCGAAGAGCTGAAGACGGCTCTCAAAGAAGTCGATTCCCAGGTCAAGTTCCTCCCAGCAAC TGCTCAGGTTGCAGCTCAGCAGGGTGCCTACCTTGCAAAATGCTTCAACCGCATGGAAGAAGCTGAGAAGAACCCTGAAGGTCCTCTCAGGTTCAGAGGC GAGGGCCGCCATCGATTTCGCCCCTTCAGGTACAGGCATCTCGGCCAGTTCGCTCCGCTGGGAGGAGAGCAGACCGCAGCACAACTCCCAGGCGACTGGG TCTCGATCGGCCACAGCAGTCAGTGGCTATGGTACTCCGTCTACGCTAGCAAGCTGGTAAGCTGGCGCACTAGGTCTCTAGTCGTAACCGACTGGGTGAA GCGTTTCATCTTCGGCAGGGACTCGAGCAGCATCTAA
AA sequence Show only first row Show all	>Lus10011259 pacid=23147153 polypeptide=Lus10011259 locus=Lus10011259.g ID=Lus10011259.BGIv1.0 annot-version=v1.0 MKAMAVFQRASRTFHDSSSLSKLLVVFTVSGGGLVAYADANSPTPVAPPQIKKKKVVVLGTGWAGTSFLKQLNDPSYEVQVISPRNYFAFTPLLPSVTVG TVEPRSIVEPIRNIVKKKNVDVIYSEAECFKIDSQSKKVHCRSTQDVNGHGKEEFEVEYDYLVVAMGGRPNTFNTPGVVEHCNFLKEVEDAQKIRRSVVD AFEKASLPSLTDEERTKMLHFVVVGGGPTGVEFAAELHDFVTEDLVRLYPAAGKYVKITLLEAADHILTMFDKRITEFAEDKFKRDGIDVKLGSMVTKVT DKEICAKARVNGQVTNIPYGMVVWSTGIGVHPVIRDFMKEVNQGNRRALATDEWLRVEGTDNVYALGDCATINQRKVMEDITAIFKKADKDNSGTLTVKE LQEAIDDICERYPQVDLYLKTKKLRNIADLLKAAKGDDAKGSIELSIEELKTALKEVDSQVKFLPATAQVAAQQGAYLAKCFNRMEEAEKNPEGPLRFRG EGRHRFRPFRYRHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKLVSWRTRSLVVTDWVKRFIFGRDSSSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10011259 [exp]	0	1
AT5G62960			unknown protein		Lus10014556 [exp]	2.0	0.7942
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10018427 [exp]	3.9	0.7823
AT3G50740		UGT72E1	UDP-glucosyl transferase 72E1 ...		Lus10041715 [exp]	5.1	0.7830
AT5G19010		ATMPK16	mitogen-activated protein kina...		Lus10041234 [exp]	10.8	0.7559
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10022215 [exp]	13.2	0.7650
AT5G42905			Polynucleotidyl transferase, r...		Lus10007199 [exp]	15.6	0.7252
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10009501 [exp]	16.5	0.7369
AT1G11390			Protein kinase superfamily pro...		Lus10002591 [exp]	18.7	0.7131
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004939 [exp]	21.0	0.7713
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10001395 [exp]	21.1	0.7507

Compare expression of checked genes

Lus10011259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.