Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62980 371 / 2e-124 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) AT3G26810 352 / 4e-117 AFB2 auxin signaling F-box 2 (.1) AT1G12820 344 / 3e-114 IPS1, AFB3 auxin signaling F-box 3 (.1) AT4G03190 344 / 4e-114 ATGRH1, ATGER1, AFB1, GRH1 AUXIN SIGNALING F BOX PROTEIN 1, GRR1-like protein 1 (.1) AT5G49980 315 / 4e-102 AFB5 auxin F-box protein 5 (.1) AT4G24390 310 / 3e-100 AFB4 auxin signaling F-box 4, RNI-like superfamily protein (.1.2) AT2G39940 194 / 1e-56 COI1 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) AT4G15475 66 / 2e-11 F-box/RNI-like superfamily protein (.1) AT5G67250 61 / 9e-10 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) AT5G23340 51 / 6e-07 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018426 [exp] 695 / 0 AT3G62980 634 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10020086 [exp] 605 / 0 AT3G62980 644 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10006738 [exp] 597 / 0 AT1G12820 647 / 0.0 auxin signaling F-box 3 (.1) Lus10011262 [exp] 567 / 0 AT3G62980 588 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10018425 [exp] 565 / 0 AT3G62980 593 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10035160 [exp] 362 / 4e-121 AT3G26810 894 / 0.0 auxin signaling F-box 2 (.1) Lus10035161 [exp] 354 / 1e-118 AT3G26810 770 / 0.0 auxin signaling F-box 2 (.1) Lus10031991 [exp] 185 / 4e-54 AT3G26810 635 / 0.0 auxin signaling F-box 2 (.1) Lus10028265 [exp] 170 / 2e-47 AT2G39940 816 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G033900 [exp] 546 / 0 AT1G12820 654 / 0.0 auxin signaling F-box 3 (.1) Potri.011G042400 [exp] 543 / 0 AT3G62980 649 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.014G134800 [exp] 372 / 8e-125 AT3G62980 947 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.002G207800 [exp] 372 / 1e-124 AT3G62980 937 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.001G323100 [exp] 338 / 7e-112 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.017G061600 [exp] 330 / 1e-108 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1) Potri.002G102700 [exp] 330 / 7e-108 AT5G49980 911 / 0.0 auxin F-box protein 5 (.1) Potri.005G159300 [exp] 328 / 2e-107 AT5G49980 934 / 0.0 auxin F-box protein 5 (.1) Potri.008G064400 [exp] 172 / 4e-48 AT2G39940 794 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.010G192900 [exp] 170 / 2e-47 AT2G39940 790 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011260 pacid=23147137 polypeptide=Lus10011260 locus=Lus10011260.g ID=Lus10011260.BGIv1.0 annot-version=v1.0 ATGGATCGGAGTCCGAAACGTAACACCACCGCCCCATCGATCTTTCCTGACGAGGTCCTCGAGCGAGTCCTCTCGACGCTCACCTCCCACAAGGACCGAA GCGCGGTCTCCCTGGTCTGCAAGGATTGGTACAACGCCGAGAGCTGGTCGAGGACCCACGTCTTCATCGGGAACTGCTACTCGGTCTCGCCGGAGATCGT CGCCCGTCGCTTCCCGAGGATCCGGAGCGTCACGCTGAAGGGGAAGCCCAGGTTCTCCGATTTCAACCTGGTGCCGGAGAATTGGGGAGCTGATGTCCAG TCGTGGCTTACGGTGTTTGCATCGGAGTATCCTTTCCTCGAGGAGCTCAGATTGAAGCGGATGAGAGTGACGGATGAGAGTTTGCAGTTCTTGGCGGTCA ACTTTTCGAATTTCAAATCGCTCTCGCTGTTGAGCTGCGACGGATTCAGCACTACCGGACTCGCTTCAGTGACTACTCATTGCAAGAATCTGATCGAGCT GGACATACAAGAGAACGGGATCGAGGACACGAATGCAGATTGGTTGAGTTGCTTTCCAGAGAACTTCAACTCATTGGAAGTGCTCAACTTCTCCAACCTA TACACTGATGTGAACCCGGAGGTTCTCGAGAAGCTAGTCAATCGTAACAAATCGTTGAAGGTTCTTAAAGTGGATCGAAGCATTCCCTTAGACTGCCTCC ACAGGCTGCTTGTCTCTGCTCCTCAGCTGACTGAACTTGGTGCTGGCTCTTTCTCTCAAGACCTCGCTCCTCGTCAGTACACGGAACTCGAACAAGCTTT CGGTCTTTGCAAGAATCTCAATGTGCTCTCTGGTTTGTGGGATGCCACTGCTTGGAATCTACCGGCTATCTACCCGGCATGTAGTAGGCTCACTTTCCTT AACTTGAGCTATGCTGCTTTGCAAAGCCAAGAGCTTGCTTCCCTGCTTCCTCACTGCCCCTCTCTTCTCCGCCTCTGGGTTCTGGACTCAGTTGGGGACA AAGGCCTAGAAGCCGTCGGATCAAACTGCCCATCCCTGGAAGAGCTCCGAGTCTTCCCCGCCGAGCCCTTCGAAGACGAAATGCCTCACACAGTGACCGA ATCCGGCATAGTATCGGTCTCCGAAGGCCGCCGTCTCTGA
AA sequence Show only first row Show all	>Lus10011260 pacid=23147137 polypeptide=Lus10011260 locus=Lus10011260.g ID=Lus10011260.BGIv1.0 annot-version=v1.0 MDRSPKRNTTAPSIFPDEVLERVLSTLTSHKDRSAVSLVCKDWYNAESWSRTHVFIGNCYSVSPEIVARRFPRIRSVTLKGKPRFSDFNLVPENWGADVQ SWLTVFASEYPFLEELRLKRMRVTDESLQFLAVNFSNFKSLSLLSCDGFSTTGLASVTTHCKNLIELDIQENGIEDTNADWLSCFPENFNSLEVLNFSNL YTDVNPEVLEKLVNRNKSLKVLKVDRSIPLDCLHRLLVSAPQLTELGAGSFSQDLAPRQYTELEQAFGLCKNLNVLSGLWDATAWNLPAIYPACSRLTFL NLSYAALQSQELASLLPHCPSLLRLWVLDSVGDKGLEAVGSNCPSLEELRVFPAEPFEDEMPHTVTESGIVSVSEGRRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10011260 [exp]	0	1
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Lus10011261 [exp]	1.0	0.9488
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10018426 [exp]	2.0	0.8903
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10027641 [exp]	7.5	0.8125
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10025485 [exp]	17.3	0.7683
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10032340 [exp]	23.7	0.7547
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10006972 [exp]	24.9	0.7948
AT1G11480			eukaryotic translation initiat...		Lus10039708 [exp]	31.7	0.8255
AT3G56460			GroES-like zinc-binding alcoho...		Lus10003691 [exp]	33.7	0.8015
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10008037 [exp]	47.0	0.8115
AT5G50970			transducin family protein / WD...		Lus10043205 [exp]	57.1	0.7595

Compare expression of checked genes

Lus10011260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.