Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12820 242 / 2e-77 IPS1, AFB3 auxin signaling F-box 3 (.1) AT3G26810 223 / 3e-70 AFB2 auxin signaling F-box 2 (.1) AT4G24390 221 / 3e-69 AFB4 auxin signaling F-box 4, RNI-like superfamily protein (.1.2) AT5G49980 219 / 2e-68 AFB5 auxin F-box protein 5 (.1) AT3G62980 218 / 6e-68 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) AT4G03190 214 / 7e-67 ATGRH1, ATGER1, AFB1, GRH1 AUXIN SIGNALING F BOX PROTEIN 1, GRR1-like protein 1 (.1) AT2G39940 96 / 5e-23 COI1 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) AT3G50080 40 / 0.0006 VFB2 VIER F-box proteine 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018426 [exp] 397 / 5e-136 AT3G62980 634 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10020086 [exp] 362 / 5e-124 AT3G62980 644 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10006738 [exp] 361 / 1e-123 AT1G12820 647 / 0.0 auxin signaling F-box 3 (.1) Lus10018425 [exp] 320 / 7e-108 AT3G62980 593 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10011262 [exp] 313 / 5e-105 AT3G62980 588 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10031991 [exp] 260 / 6e-86 AT3G26810 635 / 0.0 auxin signaling F-box 2 (.1) Lus10035160 [exp] 258 / 9e-84 AT3G26810 894 / 0.0 auxin signaling F-box 2 (.1) Lus10035161 [exp] 162 / 3e-47 AT3G26810 770 / 0.0 auxin signaling F-box 2 (.1) Lus10028265 [exp] 103 / 9e-26 AT2G39940 816 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G033900 [exp] 351 / 9e-120 AT1G12820 654 / 0.0 auxin signaling F-box 3 (.1) Potri.011G042400 [exp] 348 / 1e-118 AT3G62980 649 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.001G323100 [exp] 254 / 2e-82 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.017G061600 [exp] 251 / 4e-81 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1) Potri.005G159300 [exp] 247 / 8e-79 AT5G49980 934 / 0.0 auxin F-box protein 5 (.1) Potri.002G102700 [exp] 242 / 4e-77 AT5G49980 911 / 0.0 auxin F-box protein 5 (.1) Potri.014G134800 [exp] 212 / 5e-66 AT3G62980 947 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.002G207800 [exp] 206 / 9e-64 AT3G62980 937 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.010G192900 [exp] 94 / 3e-22 AT2G39940 790 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.008G064400 [exp] 92 / 7e-22 AT2G39940 794 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011261 pacid=23147144 polypeptide=Lus10011261 locus=Lus10011261.g ID=Lus10011261.BGIv1.0 annot-version=v1.0 ATGACGAACGCCGCAATAGCCACAGTAGTCCAAAACTGCCCTGATTTCACCCACTTCCGCCTCTGCATCATGAACCCTTGCCAACCGGACTACTCGACCA ACGAACCGATGGACGAGGCGTTCGGTTCAGTGGTCAAGACTTGCAAAAAACTCCAAAGGCTTTCCGTCTCGGGTCTCCTAACCGACCGAACCTTCGAGTA CATTGGCCGGTACGCCAAGAACTTGGAGACTCTCTCGGTGGCCTTCGCCGGAAGCAGTGACCTCGGAATGCAGTATGTCCTTGAGGGGTGCCCAAAGTTG AGGAAGCTTGAAATAAGGGACTCGCCTTTCGGGAACGCTGCTTTGCTTTCCGGGTTGGAGAAGTACGAGTCGATGAGGTCGTTATGGATGTCGGCTTGTA ATGTTACCATGAAGGGATGCCGAGCCTTGGCTCGAGAGATGCCGAGGCTGAACGTTGAAGTGATGCAGGAGGAAGGGACGGACGAGTGTAATGCTGACCG CGTTTACGTTTACCGGTCGGTTGCTGGTCCAAGACGAGATGCCCCGCCTTCTGTCGTCACTATCTCAAGCCTGTGA
AA sequence Show only first row Show all	>Lus10011261 pacid=23147144 polypeptide=Lus10011261 locus=Lus10011261.g ID=Lus10011261.BGIv1.0 annot-version=v1.0 MTNAAIATVVQNCPDFTHFRLCIMNPCQPDYSTNEPMDEAFGSVVKTCKKLQRLSVSGLLTDRTFEYIGRYAKNLETLSVAFAGSSDLGMQYVLEGCPKL RKLEIRDSPFGNAALLSGLEKYESMRSLWMSACNVTMKGCRALAREMPRLNVEVMQEEGTDECNADRVYVYRSVAGPRRDAPPSVVTISSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12820		IPS1, AFB3	auxin signaling F-box 3 (.1)		Lus10011261 [exp]	0	1
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10011260 [exp]	1.0	0.9488
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10018426 [exp]	4.2	0.8560
AT4G10790			UBX domain-containing protein ...		Lus10017317 [exp]	6.3	0.8836
AT3G58030			RING/U-box superfamily protein...		Lus10021063 [exp]	8.4	0.8525
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10027641 [exp]	12.8	0.8249
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10009942 [exp]	15.2	0.8513
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10031361 [exp]	23.8	0.8594
AT1G26270			Phosphatidylinositol 3- and 4-...		Lus10000011 [exp]	26.7	0.8440
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10008963 [exp]	27.0	0.8489
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10002565 [exp]	30.3	0.8636

Compare expression of checked genes

Lus10011261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.