Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03190 576 / 0 ATGRH1, ATGER1, AFB1, GRH1 AUXIN SIGNALING F BOX PROTEIN 1, GRR1-like protein 1 (.1) AT3G62980 573 / 0 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) AT1G12820 572 / 0 IPS1, AFB3 auxin signaling F-box 3 (.1) AT3G26810 558 / 0 AFB2 auxin signaling F-box 2 (.1) AT5G49980 519 / 8e-179 AFB5 auxin F-box protein 5 (.1) AT4G24390 513 / 1e-176 AFB4 auxin signaling F-box 4, RNI-like superfamily protein (.1.2) AT2G39940 280 / 1e-86 COI1 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) AT4G15475 96 / 1e-20 F-box/RNI-like superfamily protein (.1) AT5G67250 70 / 2e-12 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) AT5G25350 61 / 2e-09 EBF2 EIN3-binding F box protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018425 [exp] 1085 / 0 AT3G62980 593 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10018426 [exp] 924 / 0 AT3G62980 634 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10020086 [exp] 886 / 0 AT3G62980 644 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10006738 [exp] 877 / 0 AT1G12820 647 / 0.0 auxin signaling F-box 3 (.1) Lus10011260 [exp] 604 / 0 AT3G62980 397 / 2e-134 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10035160 [exp] 599 / 0 AT3G26810 894 / 0.0 auxin signaling F-box 2 (.1) Lus10035161 [exp] 501 / 3e-173 AT3G26810 770 / 0.0 auxin signaling F-box 2 (.1) Lus10031991 [exp] 422 / 1e-143 AT3G26810 635 / 0.0 auxin signaling F-box 2 (.1) Lus10011261 [exp] 303 / 8e-101 AT1G12820 241 / 4e-77 auxin signaling F-box 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G033900 [exp] 840 / 0 AT1G12820 654 / 0.0 auxin signaling F-box 3 (.1) Potri.011G042400 [exp] 837 / 0 AT3G62980 649 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.001G323100 [exp] 580 / 0 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.014G134800 [exp] 572 / 0 AT3G62980 947 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.017G061600 [exp] 569 / 0 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1) Potri.002G207800 [exp] 566 / 0 AT3G62980 937 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.005G159300 [exp] 543 / 0 AT5G49980 934 / 0.0 auxin F-box protein 5 (.1) Potri.002G102700 [exp] 536 / 0 AT5G49980 911 / 0.0 auxin F-box protein 5 (.1) Potri.008G064400 [exp] 271 / 4e-83 AT2G39940 794 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.010G192900 [exp] 268 / 6e-82 AT2G39940 790 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011262 pacid=23147130 polypeptide=Lus10011262 locus=Lus10011262.g ID=Lus10011262.BGIv1.0 annot-version=v1.0 ATGGATCGGAGCTGGAAGAGCGACAAGGTCCTCGAGCTAGTCCTCTCGACGCTGAAGTGTCATAAGGACCGGAGCTCGGCCTCACTGGTCTGCAAGGACT GGTACGATGCCGAGAGATGGTCACGGACTCACATCTTCATCGGGAACTGCTACTCTGTCTCTCCTGAAATCGTCGCCCGACGGTTCCCGAGGATTCGGAG CGTGACCCTGAAGGGGAAGCCGAGGTTCTCGGATTTTGGCCTGGTCCCTGAGGACTGGGGCGCCGATGTCCAACCCTGGCTTTCTGTGTTTGTTTCAGAG TATCCGTTCCTCGAGGAGCTTAGGCTGAAGAGGATGCGAGTTAGTGATGAGAGCTTGGAGTTCTTGGCGCTTAATTTTCCTGATTTCAAAGCTCTGTCTC TTTTGAGTTGTGATGGATTCAGTACTGACGGACTTGCCGCCATTACTGCTAATTGCAAGAATCTGACCGAGTTGGACATACAAGAGAACGGGATAGAGGA AACTGGTTCGGATTGGTTGAGTTGCTTCCCTGAAGACTTCAACTCGCTGGAAGTGCTCAACTACTCCACCTTAAACAGCGAAGTGGATCCCGAAGTTCTC GAAAACCTCGTGAGCCGATGCAAATCATTGAAGGTTCTCAAGGTCGATCGAACCGTTCCCTTGGACTGTCTCCAGAGGTTACTTGTCCACATTGGTCCTC AGCTGACCGAGCTCGGTGCTGGCTCTTTCTCGCAAGAGCTGATCCCTCGTGAGTTCACGGATCTCGAGGAAGCTTTCGGTCTTTGCAAGAATCTGAATGT GCTCTCTGGTTTGTGGGATGCTACGGCTTCGAATCTACGAGCTATCTACAAGGCTTGTAATGGGGTGACTTTCCTTAACTTGAGCTACTCTGCTTTGCAA TGTCGAGAGCTTGCTGATCTGCTTCCTCACTGCCCCTCTCTTCGCCGCCTCTGGGTCTTGGACACAGTCGGAGATGAAGGCCTAGAAGCGGTCGGATCGA ACTGCCCGTCCCTCGAAGAGCTGCGAGTCTTCCCCGCCGATCCTTTCGAGGACGAAACTCCTCACGGCGTGACAGAATCTGGCATCATCTCCATCTCCAA ACACTGCCACAACCTCAAATACATACTCTACTTCTGCACCCAAATGACCAACGCCGCAATCGCCACACTAGTCCACAACTGCCCTGATTTCACCTGCTTC CGACTCTGCATCATGACACCTTCCCTACCCGATCCGGAAACCAACGAACCGATGGACGAAGCCTTCGGTTCGGTCGCCAAAACCTGTAAGAACCTCCAAC GCCTCTCCGTCTCAGGCCTCCTAACCGATCTCGCATTCGAGTACATCGGCCGGTACGCCAAAAACTTGGAGACTTTGTCAGTGGCTTTTGCAGGAAGTAG CGATAATGGGATGGAGTATGTACTCAAAGGGTGTCCGAAGCTAAGGAAGCTCGAGATTCGAGATTCTCCATTCGGAGATGCTGCATTGATTTCGGGGTTG GAGAGGTACAAGTCGATGAGGTCGCTGTGGATGTCGGGGTGTAACGTTACTATGAAGGGATGTAGAGATTTGGCTAAGGAGATGCCGAGGCTGAATGTTG AGGTGGTGATGCAGGAAGAGGAAGAAGGGGTTGGTGATGAGTGTGGTGCTGATAAGGTTTATGTTTATCGATCGGTCGCTGGGCCGCGAGGGGATGCTCC GCCTTCTGTGGTCACCGTCTTGAGTAGGTGA
AA sequence Show only first row Show all	>Lus10011262 pacid=23147130 polypeptide=Lus10011262 locus=Lus10011262.g ID=Lus10011262.BGIv1.0 annot-version=v1.0 MDRSWKSDKVLELVLSTLKCHKDRSSASLVCKDWYDAERWSRTHIFIGNCYSVSPEIVARRFPRIRSVTLKGKPRFSDFGLVPEDWGADVQPWLSVFVSE YPFLEELRLKRMRVSDESLEFLALNFPDFKALSLLSCDGFSTDGLAAITANCKNLTELDIQENGIEETGSDWLSCFPEDFNSLEVLNYSTLNSEVDPEVL ENLVSRCKSLKVLKVDRTVPLDCLQRLLVHIGPQLTELGAGSFSQELIPREFTDLEEAFGLCKNLNVLSGLWDATASNLRAIYKACNGVTFLNLSYSALQ CRELADLLPHCPSLRRLWVLDTVGDEGLEAVGSNCPSLEELRVFPADPFEDETPHGVTESGIISISKHCHNLKYILYFCTQMTNAAIATLVHNCPDFTCF RLCIMTPSLPDPETNEPMDEAFGSVAKTCKNLQRLSVSGLLTDLAFEYIGRYAKNLETLSVAFAGSSDNGMEYVLKGCPKLRKLEIRDSPFGDAALISGL ERYKSMRSLWMSGCNVTMKGCRDLAKEMPRLNVEVVMQEEEEGVGDECGADKVYVYRSVAGPRGDAPPSVVTVLSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10011262 [exp]	0	1
AT5G11280			unknown protein		Lus10002030 [exp]	8.5	0.8860
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028582 [exp]	9.5	0.8796
AT3G17090			Protein phosphatase 2C family ...		Lus10037779 [exp]	9.8	0.7944
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10025829 [exp]	9.9	0.8858
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028583 [exp]	12.2	0.8672
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10038273 [exp]	14.7	0.8580
AT1G76190			SAUR-like auxin-responsive pro...		Lus10034570 [exp]	15.3	0.8544
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10021870 [exp]	18.1	0.8678
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10025081 [exp]	22.4	0.8383
AT2G45050	GATA	GATA2	GATA transcription factor 2 (....		Lus10042879 [exp]	39.5	0.7838

Compare expression of checked genes

Lus10011262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.