Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10500 50 / 2e-07 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25420 50 / 3e-07 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 49 / 7e-07 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G60290 49 / 7e-07 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 46 / 4e-06 ATJRG21 jasmonate-regulated gene 21 (.1) AT1G77330 46 / 4e-06 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30830 45 / 8e-06 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G30040 45 / 1e-05 ATGA2OX2 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) AT2G36690 45 / 1e-05 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 45 / 1e-05 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018950 [exp] 266 / 6e-90 AT3G60290 147 / 3e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10018949 [exp] 225 / 7e-74 AT2G44800 148 / 1e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10001460 [exp] 183 / 2e-57 AT2G36690 149 / 7e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011002 [exp] 56 / 2e-09 AT2G44800 198 / 9e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035782 [exp] 56 / 2e-09 AT5G24530 258 / 4e-84 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011979 [exp] 55 / 4e-09 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10011980 [exp] 53 / 3e-08 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10008564 [exp] 52 / 3e-08 AT2G19590 423 / 6e-150 ACC oxidase 1 (.1) Lus10014398 [exp] 52 / 7e-08 AT2G36690 482 / 4e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G185000 [exp] 159 / 1e-47 AT2G36690 147 / 5e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G048900 [exp] 66 / 6e-13 AT2G36690 250 / 5e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G048700 [exp] 66 / 1e-12 AT2G36690 255 / 3e-82 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G049000 [exp] 62 / 1e-11 AT2G36690 209 / 5e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G080600 [exp] 58 / 5e-10 AT5G07480 453 / 9e-161 KAR-UP oxidoreductase 1 (.1) Potri.011G150200 [exp] 57 / 1e-09 AT4G10500 323 / 1e-109 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451700 [exp] 54 / 7e-09 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451600 [exp] 54 / 9e-09 AT4G10500 406 / 5e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150300 [exp] 53 / 2e-08 AT4G10500 327 / 4e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451500 [exp] 52 / 4e-08 AT4G10500 325 / 2e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011263 pacid=23149891 polypeptide=Lus10011263 locus=Lus10011263.g ID=Lus10011263.BGIv1.0 annot-version=v1.0 ATGATTCAAGTTCATTCAAGACAAGTAGAAGTAGTGGTGGATGAAGAGATCCCAACCATAGATTACTTCTCCCTCTTCTCTTCTGACCCTATCAAGCGTT TTGATGCACTCGCACGTCTCTCGTCTGCCTGTGAAGGCTACAGGTTTTTCAACTTGGTGAATCATGGAATTTCGGATAAAGTGATGGAAAATGCACCAAG TTGGATTGGAGAGTTTTTCGAGAAGAATGGTGTGGAAGAGAAGAGCAAGTATAGAAAAGGAGATCCAAAAGCTAGGATTCTTCAGGATGGCAGGTGTCAC GCCGGTGAGAATAAGGAACATCTTAAGCTACTGGCTCGTCCTCAACTCCATTGCCCTCTTAATCCTGCGGAGGCTTTGGGAGATTACGTGACCAAGTTCC ACCAAGTGAAGCTAGGGCTAGCAAGAGCGATATCCACAATTCTAGGACAAGAAGAGTCCTACATCAACTTTCGATCTCGAGTCAGACTTCGATGTGGCAG CAATGAACCAATACTAGCCAAATTTCGAGTCAAAAGGAACCATGGGTTTGGCCGAACACACTGA
AA sequence Show only first row Show all	>Lus10011263 pacid=23149891 polypeptide=Lus10011263 locus=Lus10011263.g ID=Lus10011263.BGIv1.0 annot-version=v1.0 MIQVHSRQVEVVVDEEIPTIDYFSLFSSDPIKRFDALARLSSACEGYRFFNLVNHGISDKVMENAPSWIGEFFEKNGVEEKSKYRKGDPKARILQDGRCH AGENKEHLKLLARPQLHCPLNPAEALGDYVTKFHQVKLGLARAISTILGQEESYINFRSRVRLRCGSNEPILAKFRVKRNHGFGRTH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Lus10011263 [exp]	0	1

Compare expression of checked genes

Lus10011263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.