Plant FIBer expression Database

Lus10011265 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64680 59 / 2e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018951
[exp]
315 / 8e-110 AT5G64680 81 / 8e-19 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G068500
[exp]
139 / 1e-40 AT5G64680 90 / 5e-22 unknown protein
PFAM info
Representative CDS sequence
>Lus10011265 pacid=23149895 polypeptide=Lus10011265 locus=Lus10011265.g ID=Lus10011265.BGIv1.0 annot-version=v1.0
ATGGCCGAGGAGGAAGAGCTGTCGGCGTACCAGCCTGGTCCCGGATTCGAGCAAGATTCAAGAGAGCAGCTCGTCGATATCAGTCCCGCCATCTCTAGCT
CAACGGAGCTTTGGCTTATCCAGTGGCCGCATAACGATGTACAACGCTTTACTCCTCCTCCGATTCCTTTTCCTGTATACTTCCGATTCGTTAATGGAGT
TTATATCTTTTCCTGCAAGCTTCCTAACATCCACGGCAAGGAACTTTCCATCAGTCTGGATAGCAATGGTTGCTCGGCAAGCTTCGAGGATTTGTCAGGG
AAGATGTATGATATAGTCGGAACTGATCAAGTGCAAGGTCCATCAGTCTTCATGTCCTCTGTATCAGAAACTGAAATTGTTGGGAACATTTCTCGCCGAG
TTTCCCTCGTACACTACCCTGATCCAAAGGAGCTAGAGCAGAAAGACGCAGCGAAGAAGTCGAAGCGGCTGCACCTTCTGACTTCCAGTTCTTCAATAAA
AAACTCTTCACAGCGAAGTAGTAGTAAGATGACGAAATCAAGGGGGCCAGGGGCATCAACTTACAGTAGCAGGGATGGGCCAGGTTCTTCTGCAAGAAGG
CAAAGACCAACACAAACACACCAGGGCTCTGCATCGAAGGGCGGAGGATCTTCTATGGCCTCCAAACAACGCCACAACAATTCGACCGTCCTTTCAGGTC
CTTCGGAACGTGGAACGGCAGACAGATGA
AA sequence
>Lus10011265 pacid=23149895 polypeptide=Lus10011265 locus=Lus10011265.g ID=Lus10011265.BGIv1.0 annot-version=v1.0
MAEEEELSAYQPGPGFEQDSREQLVDISPAISSSTELWLIQWPHNDVQRFTPPPIPFPVYFRFVNGVYIFSCKLPNIHGKELSISLDSNGCSASFEDLSG
KMYDIVGTDQVQGPSVFMSSVSETEIVGNISRRVSLVHYPDPKELEQKDAAKKSKRLHLLTSSSSIKNSSQRSSSKMTKSRGPGASTYSSRDGPGSSARR
QRPTQTHQGSASKGGGSSMASKQRHNNSTVLSGPSERGTADR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G64680 unknown protein Lus10011265
[exp]
0 1
AT5G47890 NADH-ubiquinone oxidoreductase... Lus10030922
[exp]
1.0 0.9104
AT1G65650 UCH2 Peptidase C12, ubiquitin carbo... Lus10042047
[exp]
2.0 0.8881
AT1G65420 NPQ7 NONPHOTOCHEMICAL QUENCHING 7, ... Lus10027674
[exp]
2.8 0.8753
AT2G37680 PAT3, FRY1, FHY... unknown protein Lus10023781
[exp]
3.5 0.8827
AT5G06210 RNA binding (RRM/RBD/RNP motif... Lus10013306
[exp]
4.9 0.8677
AT4G14965 ATMAPR4 membrane-associated progestero... Lus10018026
[exp]
5.3 0.8678
AT1G01940 Cyclophilin-like peptidyl-prol... Lus10009237
[exp]
6.5 0.8587
AT4G31720 STG1, TAFII15, ... TBP-ASSOCIATED FACTOR 10, SALT... Lus10005077
[exp]
11.0 0.8636
AT3G05870 APC11 anaphase-promoting complex/cyc... Lus10015126
[exp]
11.5 0.8518
AT5G55140 ribosomal protein L30 family p... Lus10031912
[exp]
12.0 0.8523

Lus10011265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.