Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028649 [exp] 372 / 1e-124 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10028722 [exp] 164 / 5e-47 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10003089 [exp] 83 / 1e-18 AT5G53840 54 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10021237 [exp] 82 / 6e-18 ND / Lus10018863 [exp] 79 / 8e-17 AT5G44950 62 / 1e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10036778 [exp] 61 / 2e-10 ND 39 / 0.003 Lus10028610 [exp] 58 / 2e-10 ND / Lus10018912 [exp] 59 / 6e-10 ND / Lus10004525 [exp] 54 / 6e-08 AT4G01840 402 / 3e-137 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011267 pacid=23149936 polypeptide=Lus10011267 locus=Lus10011267.g ID=Lus10011267.BGIv1.0 annot-version=v1.0 ATGTTGATGTTCGCCACGAGATTATCGAACATTTCATTGCTTGAAGAGTTAGCTGTGAAATGGTCGAGACGCCTAACAAAGCTCAAGGTTGTAGGCTCTT CATTGAAGCACTTGGAAGTAATAGATTGCCTACCTTCGGAATTGATGGAGATTGATCATGCCCCTCGCCTCAAGCGGTTGATACTTGATAATAGTTCCCA CCATGTGAAGGAAATCCAAGTGGGTAATTTCCCATCGCTTGTGGATATGAGCTTAGGCCACAATTTCAATGGTATATTTAGAGCACTTTCAGGATGTGCT AGTCGATTGGTGTCCCTCTCGTTGATGTCGTCCGGATACTGGAGGGCGATTTCGGATGCAGCTGAACAGGGCAACCTGGAGCGGCTAATGGTGCTGGTTT CGGCAGGCAATCATCATAGCATCCTTGGGTTGATTCCTTTGATAAATTTGTGTTCCCGTTTGCACACACTGCGATTGCTTCTGTGTACGCATTATTACAC CGCGGAACCTGATCAGCAGAGTGTGGATGTGGTTAAATTACAGCGGGAGAGCATCAAAGTTTTTTTGTTGAGCATCAAAGTAGTGGAGGTGATCGGGTTT CGCGGTTATGAGTTGGAGTACGAGTTTATGGAGTATGTAATGGAATACTTCGTGGGGCTAGAAAGAATAGTGATTGATGGGTTCACTACTTCCTTCTTTT ATGAAGATAGAAGTATTCCTCACGAGGTTCGATTTCATGGCTGCAGCAAGCGAGGCCGCCGCAAAATCAAAATGCTTATATTCAAGCTTTTATTGTGCTT GCAATCAATGTATACCACATTTAGCCCATATTAG
AA sequence Show only first row Show all	>Lus10011267 pacid=23149936 polypeptide=Lus10011267 locus=Lus10011267.g ID=Lus10011267.BGIv1.0 annot-version=v1.0 MLMFATRLSNISLLEELAVKWSRRLTKLKVVGSSLKHLEVIDCLPSELMEIDHAPRLKRLILDNSSHHVKEIQVGNFPSLVDMSLGHNFNGIFRALSGCA SRLVSLSLMSSGYWRAISDAAEQGNLERLMVLVSAGNHHSILGLIPLINLCSRLHTLRLLLCTHYYTAEPDQQSVDVVKLQRESIKVFLLSIKVVEVIGF RGYELEYEFMEYVMEYFVGLERIVIDGFTTSFFYEDRSIPHEVRFHGCSKRGRRKIKMLIFKLLLCLQSMYTTFSPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011267 [exp]	0	1
AT2G01100			unknown protein		Lus10025460 [exp]	3.7	0.9334
					Lus10006539 [exp]	6.3	0.9334
AT1G62040		ATG8C	autophagy 8c, Ubiquitin-like s...		Lus10015563 [exp]	7.5	0.9398
AT1G04970			lipid-binding serum glycoprote...		Lus10033808 [exp]	11.5	0.9372
AT4G29890			choline monooxygenase, putativ...		Lus10008571 [exp]	12.5	0.9338
AT2G39920			HAD superfamily, subfamily III...		Lus10028259 [exp]	14.7	0.9341
AT3G49420			Got1/Sft2-like vescicle transp...		Lus10025494 [exp]	15.1	0.9184
AT3G53490			unknown protein		Lus10015041 [exp]	16.4	0.9269
AT1G56700			Peptidase C15, pyroglutamyl pe...		Lus10001521 [exp]	16.5	0.9296
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10023828 [exp]	17.5	0.9307

Compare expression of checked genes

Lus10011267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.