Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41630 51 / 1e-07 F-box/RNI-like superfamily protein (.1) AT5G53840 51 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G13570 48 / 1e-06 F-box/RNI-like superfamily protein (.1) AT3G58860 47 / 2e-06 F-box/RNI-like superfamily protein (.1) AT5G25860 47 / 3e-06 F-box/RNI-like superfamily protein (.1) AT1G66290 46 / 5e-06 F-box/RNI-like superfamily protein (.1) AT1G60410 46 / 5e-06 F-box family protein (.1) AT1G69630 46 / 5e-06 F-box/RNI-like superfamily protein (.1) AT5G03100 46 / 6e-06 F-box/RNI-like superfamily protein (.1) AT1G80960 45 / 1e-05 F-box and Leucine Rich Repeat domains containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028722 [exp] 197 / 8e-61 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10018863 [exp] 174 / 1e-54 AT5G44950 62 / 1e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10028602 [exp] 124 / 2e-34 AT1G80960 50 / 1e-06 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Lus10028721 [exp] 112 / 9e-32 AT5G53840 56 / 5e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10028558 [exp] 108 / 1e-30 AT3G51530 56 / 4e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10005646 [exp] 106 / 1e-28 AT1G80960 57 / 1e-09 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Lus10005091 [exp] 102 / 2e-25 AT1G69010 149 / 5e-41 BES1-interacting Myc-like protein 2 (.1) Lus10003089 [exp] 90 / 3e-22 AT5G53840 54 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10037151 [exp] 53 / 2e-08 AT5G02700 60 / 2e-10 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G098700 [exp] 48 / 1e-06 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.011G136200 [exp] 45 / 1e-05 AT1G56400 215 / 2e-64 F-box family protein (.1.2) Potri.017G107600 [exp] 43 / 7e-05 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.011G024300 [exp] 42 / 0.0001 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.010G134200 [exp] 42 / 0.0001 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.013G146800 [exp] 42 / 0.0002 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.011G024200 [exp] 41 / 0.0003 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.015G002100 [exp] 40 / 0.0005 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 39 / 0.001 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011268 pacid=23149934 polypeptide=Lus10011268 locus=Lus10011268.g ID=Lus10011268.BGIv1.0 annot-version=v1.0 ATGGCGCCTTTCGACTCTGTTTCTACATCAGCAGGAGAAGATGAAGTTGATTTATGTATAACTCATAAGTTATTTGATGAAGTTTGTATGTTAGGGGGAG GATTGGATTGGATTAGTGAGTTGCCCGATGAACTTGTCATCAATATCGTATCTCGTTTGACGTCTCTGCGAGAAGCCGTTAGAACATCAGTCCTGTCAAG TAAGTGGATAAACTTGTGGAAATCAGCCGTTTTGGTGCTCGACTTTGATGGCTCGGAGGAGTTGCGGGACATTTGCAAGCTGGACTGGATCCCAGTAAGA ATTCTTCAGGAGAAGAGGCGTTGGTACAAGAATTGGGTGAACGGTGTTATATCCCAAGTGCAACAACAGAGTTGCTCAAGAATAAGCAAGTTGAGCCTTT TATTTAACTTGACAAATAATTGCAATTCGGAAGGGGATATTGATAGATGGATCAAGTTTGCAATTTCAAAGAGGGTTGAGTCTCATCATCTGGCTTTCAT CTGGGAAACGGTTATCTTCGAACTACTTTTTTTCGGAGGAATGTTACAGTCGCATGAAAACTCCAGCCGGAATGCATGA
AA sequence Show only first row Show all	>Lus10011268 pacid=23149934 polypeptide=Lus10011268 locus=Lus10011268.g ID=Lus10011268.BGIv1.0 annot-version=v1.0 MAPFDSVSTSAGEDEVDLCITHKLFDEVCMLGGGLDWISELPDELVINIVSRLTSLREAVRTSVLSSKWINLWKSAVLVLDFDGSEELRDICKLDWIPVR ILQEKRRWYKNWVNGVISQVQQQSCSRISKLSLLFNLTNNCNSEGDIDRWIKFAISKRVESHHLAFIWETVIFELLFFGGMLQSHENSSRNA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41630			F-box/RNI-like superfamily pro...		Lus10011268 [exp]	0	1
AT1G04970			lipid-binding serum glycoprote...		Lus10014625 [exp]	4.6	0.9522
AT3G26100			Regulator of chromosome conden...		Lus10006242 [exp]	4.7	0.9515
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10035023 [exp]	5.5	0.9419
AT1G62040		ATG8C	autophagy 8c, Ubiquitin-like s...		Lus10015563 [exp]	8.3	0.9493
AT5G13990		ATEXO70C2	exocyst subunit exo70 family p...		Lus10012555 [exp]	10.2	0.9409
AT1G10800			unknown protein		Lus10037441 [exp]	12.7	0.9325
AT5G58220		ALNS, TTL	allantoin synthase, transthyre...		Lus10035966 [exp]	15.0	0.9365
AT2G23450			Protein kinase superfamily pro...		Lus10032741 [exp]	15.9	0.9479
					Lus10009362 [exp]	17.0	0.9233
AT1G44770			unknown protein		Lus10014131 [exp]	19.5	0.9456

Compare expression of checked genes

Lus10011268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.