Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28706 478 / 3e-169 pfkB-like carbohydrate kinase family protein (.1.2.3.4) AT5G43910 362 / 5e-124 pfkB-like carbohydrate kinase family protein (.1.2.3) AT1G17160 42 / 0.0007 pfkB-like carbohydrate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000210 [exp] 331 / 2e-113 AT4G28706 308 / 2e-104 pfkB-like carbohydrate kinase family protein (.1.2.3.4) Lus10026199 [exp] 44 / 0.0001 AT1G17160 496 / 8e-173 pfkB-like carbohydrate kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254500 [exp] 496 / 2e-176 AT4G28706 537 / 0.0 pfkB-like carbohydrate kinase family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10011270 pacid=23149909 polypeptide=Lus10011270 locus=Lus10011270.g ID=Lus10011270.BGIv1.0 annot-version=v1.0 ATGGCGTCGTCGGAAACCCCTCCGCTTCCTCCTCTCCCTGAGAATCGAGTCGTCTTAGGGTGCGGAGCTGCGTCCGTTGACTTCTTGGCCGCAGTGGCTG CTTATCCTAATCCCGATGACAAAATCAGAACCACTAGTCTCAAGGTTCAGGGCGGCGGGAATGCTGGGAATGCTCTGACCTGTGCCGCTCGCTTGGGATT AAATCCCAGAATCATCTCTAAGGTTTCCGATGACAGTCAAGGGAGGGGGGTTTTGGCTGAACTGGAGGCCGATGGTGTTGACACTTCTTTCTTCGTGGTC GCCAAGGAAGGCAATTCGCCATTCACCTATGTCATCGTTGACAACCAAACGAAAACTCGAACATGTATTCACACTCCTGGAGACCCACCCATGATTCCTG AAGATCTTTCTGAATCCAGTCTTGCTTCAGCATTAGATGGAGCTACACTGGTCTATTTTGATGGAAGGTTGCATGAGACTGCTTTAGTTATTGCGCAGGA GGCTACTCGCAAGAACATACCTATTCTGATTGATGCAGAAAGGAAGAGGGAAGGGTTGGATGAGCTGCTTAACCTGGCTACTTATGTTGTATGCTCAGCA AAGTTCCCACAGTCATGGACTGAGGCAGCAACAATTCCCAGTGCCCTTGTTTCATTGCATTTAAGATTTCCTAAACTCAAGTTCGTGATTGTGACCTTGG GCAACGATGGATGCATAATGCTCGAAAGAAGTTCGATTGGTGAGTCATCATCTGAAGAGATTGATGTAGATAGCTTACTGGAGTCACTGGCACATAAAAA GGATGTTGGAACAATCTTACCAAAATGTTATTCTTCGGGGTTGACTAGAATAAAAGCAGAAGGAATAGGCACTGTAAATGGCAGATTGTTTGTAGGGACT GCTGAAAAAATACCACCAGAGGAGCTTGTTGATACAACTGGTGCTGGAGATGCGTTTATTGGATCAGTACTTTACGGAATAAGCGCCAACATGCCACCCG AGAAAATGCTGCCATTTGCTGCTCAAGTGGCTGGGGCTGGGTGCAGAGGTCTGGGAGCTCGAACAGCTCTTCCACAGCGCACAGATCCACGCTTGCTTCC CTTTTTCCAGTGA
AA sequence Show only first row Show all	>Lus10011270 pacid=23149909 polypeptide=Lus10011270 locus=Lus10011270.g ID=Lus10011270.BGIv1.0 annot-version=v1.0 MASSETPPLPPLPENRVVLGCGAASVDFLAAVAAYPNPDDKIRTTSLKVQGGGNAGNALTCAARLGLNPRIISKVSDDSQGRGVLAELEADGVDTSFFVV AKEGNSPFTYVIVDNQTKTRTCIHTPGDPPMIPEDLSESSLASALDGATLVYFDGRLHETALVIAQEATRKNIPILIDAERKREGLDELLNLATYVVCSA KFPQSWTEAATIPSALVSLHLRFPKLKFVIVTLGNDGCIMLERSSIGESSSEEIDVDSLLESLAHKKDVGTILPKCYSSGLTRIKAEGIGTVNGRLFVGT AEKIPPEELVDTTGAGDAFIGSVLYGISANMPPEKMLPFAAQVAGAGCRGLGARTALPQRTDPRLLPFFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28706			pfkB-like carbohydrate kinase ...		Lus10011270 [exp]	0	1
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10022815 [exp]	3.7	0.8295
AT5G10460			Haloacid dehalogenase-like hyd...		Lus10005305 [exp]	4.5	0.8180
AT2G43950		OEP37, ATOEP37	ARABIDOPSIS CHLOROPLAST OUTER ...		Lus10013621 [exp]	6.6	0.7747
AT2G17240			unknown protein		Lus10043214 [exp]	7.6	0.7853
AT4G19150			Ankyrin repeat family protein ...		Lus10001048 [exp]	8.5	0.8106
AT4G14965		ATMAPR4	membrane-associated progestero...		Lus10042022 [exp]	10.2	0.8282
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Lus10007576 [exp]	10.4	0.8321
AT3G54900		ATGRXCP, CXIP1	GLUTAREDOXIN, CAX interacting ...		Lus10012592 [exp]	11.2	0.7649
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10031458 [exp]	12.6	0.8066
AT4G30580		LPAT1, ATS2, EM...	lysophosphatidic acid acyltran...		Lus10036259 [exp]	12.6	0.7578

Compare expression of checked genes

Lus10011270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.