Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04150 1009 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G51570 922 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT3G57880 922 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 915 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G06850 870 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 862 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G11610 859 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 813 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 764 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 758 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012026 [exp] 925 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 923 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 865 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 859 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 859 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 831 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 795 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10031244 [exp] 687 / 0 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10033097 [exp] 683 / 0 AT1G74720 1566 / 0.0 QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254400 [exp] 1178 / 0 AT1G04150 1096 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 926 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 919 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 917 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 914 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 909 / 0 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 908 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.009G065600 [exp] 892 / 0 AT5G06850 1308 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049300 [exp] 872 / 0 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G105400 [exp] 870 / 0 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0484 [flax] [poplar] Peroxisome PF08372 [flax] [poplar] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Lus10011271 pacid=23149951 polypeptide=Lus10011271 locus=Lus10011271.g ID=Lus10011271.BGIv1.0 annot-version=v1.0 ATGGTCGCCGGCGGCGGAGGAGAGTCGAAGCTAGTAGTGGAAGTGGTGGCAGCTCACAACTTACTCCCCAAAGATGGGGAACGATCATCTTCACCCTACG TGGAAGTAGAGTTCGAAAACCACAAAATTAGAACTCAAGTCAAACACAAAGACTTGAACCCAATCTGGAATGAGAAGCTTTTCTTCCCTATCAGCAAACT CCCCGACCTCCCTTACCGCTCTATCGACGTCTGCGTCTTTAACGACCACTCTCCATCATCCCAATCCCGCAATTTCTTAGGCAGAGTTCGTATCTCTGGC TCTGCAGTCTCAACAACACATGACGCTGATGATGATGCTGAAGAAAAAGTGCAAGTGCAGCTCTACACTCTCGACAAGCGGAGCCTTTTCTCTCATGTCA GAGGAGAGATCACCCTCAAGCTCTACGTTACATCGACAGATGGAAATGGGTTCCCAAATCACAATAAGAAGAACAATAAGAAGCAGTTGCAGAATCAGCA GGTGCATCAAAATGGCCACACCACTGTTCTCCATCATCATCCAGCAGGAGAGATATCGATGATGATGAAGCCATCAATTATTCATAGCACTACTCCTCCA TCATCCATAGAGTTTGCTATTAAGGAGACGAGTCCTGCTCATCTTGGTTTGAAGAAAGACAAGACCTTTTCCACGAATTATGATCTTGTGGAGCAAATGC AGTATCTTTATGTTAGAGTTGTAAAGGCTAGGGACATCAATATTGCAGGAGGGGAGATTGTGGCAGAAGTGAAGCTTGGAAACTACAGAGGGATTACAAA GAGGGTTTCTAGTAATTTGAATTTGGAGTGGGACCAAGTGTTTGCATTTTCCAAAGACTGCATCCAGTCCTCAATGGCTGAGATTTTCATCAAGGAAGCT ACCAGGGATGAGTATTTGGGTCGGATTTGGTTCGATTTGAACGAGGTTCCTAAAAGGGCTCCTCCTGACAGTCCATTAGCTCCACAGTGGTACAGAATGG AGCACAACAACAACAAGATGACCAAAGGTGGTGGGGAGGTTATGGTTTCTATTTGGTTGGGGACTCAAGCTGACGAGGCGTTTGCTGAGGCTTGGCATTC CAAATCTGCCAATGTTCATTTCGATGGACTCTGTTCCATCAAATCCAAGGTGTATTTGTCTCCAAAGTTATGGTATTTAAGAGCTTCCGTCATTGAAGCT CAAGACATATTATTATTGCCTGCTGCTGCTGGTGGTGGTGGTATGAGGTTCCCTGAGCTGTTCGCCAAGCTTCAGGTTGGGAATCAGATTCTCAGGACTA AAATTGCAAGTCCTAACCCAAACAGAAACATCTCCAGTCCTTACTGGAATGATGATCTGCTCTTTGTTGTGGCAGAACCCTTTGAGGATTACTTGACAGT TTCCATTGAGGATAGGGTTGGTCCTGGGAGGGAAGAAACACTGGGGAAGTTTGTAGTTCCTGTCAATGCAATCGAAAGGTGCCATGACGATAAGCAAGTT GTGTCTAGGTGGTTCAATCTGGATCAGCAGAAAATGAGATTCTCATCAGGGTGTAAAGTTCACCTGAGGCTGTCTCTGAATGGAGGTTACCATGTTCTTG ATGAGGCTACAATGTACAGTAGTGATGTTCGGCCTACAGCGAAGCAGCTTTGGAAGCCTCACATTGGCGTGCTTGAGATGGGGATTCTGGGTGCTACAGG GCTCATGCCTATGAAGTTCAAACAAGGGAATAGAGAAACAACTGATGCCTACTGCATAGCCAAATATGGTCAAAAATGGGTTAGAACCAGGACAGTTGTT GATAGCTTGTCACCAAAGTGGAATGAGCAGTACACTTGGGAAGTGTTTGATCCTTGCACTGTTGTCACCATTGGGGTATTCGACAACTCTAGAGTGGATG GTGGTGATGGGGATTTGCGTATAGGCAAAGTAAGAATCCGATTGTCCACGCTAGAATCGGATAGGGTGTACACTCACTCTTACCCTCTCCTAATGCTGCA TCCGACAGGGGTGAAGAAAATGGGAGAGATTCATTTGGCAGTGAGGTTCTCTTGTGCTAATGTGGCCAATATGTTGAACATGTACACTCTCCCACTACTA CCAAAGATGCACTACGTACATCCTTTGAGTGTGAACCAAGTCGAGACATTGAGGTATCAGGCGATGAATGTGTTGTCCTCGAGGCTGAGTAGGGCCGAGC CACCGTTGGGGAGGGAGGTGGTGGAGTACATGATTGATCATGATTCTCATATGTGGAGCATGAGGAGGAGCAAAGCCAATTTCGCAAGGGTGATCAATGT ACTCTCCGGTCTAGTTGCATTTGGAAGAATGGTGGAGGCAATGAGGAGTTGGCACAAACCAGTATACTCAGTCCTCTTCCTAGTAGTATTCTTGTTTCTT GTACTTATGCCGGAGCTCATCATGCCATTGATGCTCGTAATGATGGCGGTAGTGGGACTATGGAGATACCATTCGTCAAGGCCACGCCATCCGCCTCACA TGGATACAAGGCTGTCCAATGCAGAGAATGTAAATCCGGACGAGCTAGATGAAGAGTTCGACTCGTTTCCAACGAGTAGGAACGCTGACATTGTGCGGAT GAGGTATGATAGGGTGAGGAGTGTGGCGGGAAGGATACAGACATTGGTGGGTGACATGGCAACTCAAGGGGAGAGATTTTATGCGCTGGTGAGCTGGAGG GATCCGAGGGCAACGTTCCTGTTTGTGGCGGGTTGCCTTGTGGCTGCTACTGGGTTGTATGGGGTGCCTGTGAGAGTTGTGGTGGGTGTGTGGGGGTTGT ACATGATGAGGCCTCCCAGGTTCAGGAATAAACTGCCGTCCAAGGCTTCCTGCTTCTTCAAGAGGTTGCCTACTAAGGCTGATAGCTTGCTCTAG
AA sequence Show only first row Show all	>Lus10011271 pacid=23149951 polypeptide=Lus10011271 locus=Lus10011271.g ID=Lus10011271.BGIv1.0 annot-version=v1.0 MVAGGGGESKLVVEVVAAHNLLPKDGERSSSPYVEVEFENHKIRTQVKHKDLNPIWNEKLFFPISKLPDLPYRSIDVCVFNDHSPSSQSRNFLGRVRISG SAVSTTHDADDDAEEKVQVQLYTLDKRSLFSHVRGEITLKLYVTSTDGNGFPNHNKKNNKKQLQNQQVHQNGHTTVLHHHPAGEISMMMKPSIIHSTTPP SSIEFAIKETSPAHLGLKKDKTFSTNYDLVEQMQYLYVRVVKARDINIAGGEIVAEVKLGNYRGITKRVSSNLNLEWDQVFAFSKDCIQSSMAEIFIKEA TRDEYLGRIWFDLNEVPKRAPPDSPLAPQWYRMEHNNNKMTKGGGEVMVSIWLGTQADEAFAEAWHSKSANVHFDGLCSIKSKVYLSPKLWYLRASVIEA QDILLLPAAAGGGGMRFPELFAKLQVGNQILRTKIASPNPNRNISSPYWNDDLLFVVAEPFEDYLTVSIEDRVGPGREETLGKFVVPVNAIERCHDDKQV VSRWFNLDQQKMRFSSGCKVHLRLSLNGGYHVLDEATMYSSDVRPTAKQLWKPHIGVLEMGILGATGLMPMKFKQGNRETTDAYCIAKYGQKWVRTRTVV DSLSPKWNEQYTWEVFDPCTVVTIGVFDNSRVDGGDGDLRIGKVRIRLSTLESDRVYTHSYPLLMLHPTGVKKMGEIHLAVRFSCANVANMLNMYTLPLL PKMHYVHPLSVNQVETLRYQAMNVLSSRLSRAEPPLGREVVEYMIDHDSHMWSMRRSKANFARVINVLSGLVAFGRMVEAMRSWHKPVYSVLFLVVFLFL VLMPELIMPLMLVMMAVVGLWRYHSSRPRHPPHMDTRLSNAENVNPDELDEEFDSFPTSRNADIVRMRYDRVRSVAGRIQTLVGDMATQGERFYALVSWR DPRATFLFVAGCLVAATGLYGVPVRVVVGVWGLYMMRPPRFRNKLPSKASCFFKRLPTKADSLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04150			C2 calcium/lipid-binding plant...		Lus10011271 [exp]	0	1
AT1G04150			C2 calcium/lipid-binding plant...		Lus10000164 [exp]	1.0	0.9640
AT3G60670			PLATZ transcription factor fam...		Lus10009283 [exp]	2.4	0.9534
AT3G48710			DEK domain-containing chromati...		Lus10022439 [exp]	16.4	0.9126
AT5G40030			Protein kinase superfamily pro...		Lus10014501 [exp]	17.0	0.9414
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10026589 [exp]	19.0	0.9527
AT3G50620			P-loop containing nucleoside t...		Lus10009348 [exp]	21.6	0.8764
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10022780 [exp]	22.0	0.8851
					Lus10041871 [exp]	22.3	0.9395
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10013874 [exp]	26.6	0.9411
AT4G34880			Amidase family protein (.1)		Lus10002804 [exp]	28.0	0.8842

Compare expression of checked genes

Lus10011271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.